Gene detail

Detailed information of aflo_s0033.g58.t1 in Acropora florida

Genomic Location: sc0000033_pilon:947981...960964
NR annotation: XP_029194656.2, FAS-associated factor 2-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0033.g58.t1

CTTTTGTCCCCGTTGCTCGAAAAACGACTGGGACGAGTTGTTGACTCGACGATGTGTCGCGAAGGTACCTGGGAAATAGGAACAAAATGGCGGAAGCAAACGATGATTCGGTTTCTCGAAGTGAGATTTTGGCTCAATTTCAGGATATAACGGGGTACAGTGATGCTGAAAAATGTAGAATTGTCCTTGAGCGTCACAACTGGGACATTGAGACTGCTGTCCAAGATACATTGAATGAAGCTGAAGGTTCCCAACCAGTTTTTCATCCTCTGCAAAACTCATTTGATGGCAGTGATGAAGAGGACTATTCAGCAAATGACATAAGCATGACACAGAACCAAGTATCATCAGCCAGAGATGCCACAGGTTCACCAACTCCAAACACAGAGGTTCAGAGGTTTGGCCAGAGCTGGTTGCTGTGGGCTCTATCTGTTCCATTTCTTCCCTTTAGATTTGCTTCCAGTGTATTATGCGATATTTTTGGATGGATAGGATCTCTTCTATGGCCATCTGCATTTCAAGCTCGCACAACTCCTCTTGAAGATGTGTTGCGGTTTAAAGAAGATTTTGAAAGGGAATATGGTGCCATTCACCCAACATTTTATCAAGGAAGCTACAGCCAGGCTCTGAATGATGCAAAAAGGGAGCTCCGCTTTCTTCTAGTTTATCTTCATAGTTCAGAACATCAGGATACCGAGGAATTTTGTAGGTCAACAATGACAAATGAAGGCTTTAAGGAGTATGTGAATGGAAACATGTTATTCTGGGCTGCGAATGTGAAATCAAGCGAAGGTTATCGAGTATCTCGTGCTGTGCGTGAAGCTACTTATCCTTTCCTGGCTCTTATTTGTTTAAGGGATAACCGAATGACAGTCGTAGGGAGAATGGAAGGAATAATGACTGTTGACGACTATATTTCATGTCTGGCACGTCTAATAGCGGACAATGAGGCTCTTTTGGTTGCGGCGAGAGTTGACAGACAGGAGCGCACACAAGCCCAACAGCTCCGTGAAGAGCAGGACGAAGCTTACCTGGAATCTGTTCGAGCTGATCAAGAAAAAGAACGAAAGAAACGGgaagaagaggacaaaaagcgacaggaagaagaaacgagaagaagaaaggaagaagccaaaagaaACCGAGAACATTCTATAGCTCAAGACCGCGTGGATAGAAAATGCCGTGTGCCTGACGAACCAGATGCTACAAATGCTGATTCTATCCGTGTGCTGATTAAATTATCCAATGGAAAACGTTTGGAGAGAAGGTTCCTTAAATCTCAACCGTTACAATCGTTGTACGACTTTGTATTTTGCGACGAAGAATCACCAGCAGAATTTGTCCTTGTTTCAAACTTTCCACGCAAAGTGTATGCGCTGGACTCCGCAAGTGAACATCAGACCATAGAGGATGCCGGTATCGAAACCAATGCAATGTTGTTTGTACAAAATATCGAAGAGGAGAGTGACAGTGATTGACACCTGACAAGAGTTATCAGTACAATCAACATCATCAGCCTAGAACGCTTGGGAACTAAGCTGAGCCATCGGATTGTTGAGTCATTTTGGAAATACATGGTAAAAAAATTGCCGTTACAAAGAATGATTATTCCTGaagagaccggtttccagttgttcgagaacaaagcaatggaatggagctttagagaaattaatttgcattttcgtttgtcaacaacagaggaaaaggcaaattatttccttgaaactggaaacctgaatcttttgttctggtcgcagaatttgaaactggcctgttgTGGTAAAGATAATCGCCCAATCACTGTGTGACTGAACGCCCACGTGACATCCTCTGACTATGGGAACCTTTAAGTTGCCTTGCAGTTGAAACAATGATTTGGCTAAAGAAAGGAAGTCCTATGGTATCGAAACTTTGATTTGCAAGCTGTGGCGTGACGGAAAACCGACGGTACGAAACAAAGGCGAAGTTGTACCTTATCATAAAATTTTAATATTTACCAAGATGTAAAAAAAAAAAACATCTTTTAGAATAGCGCTAAACGATCAACGTACCGCGAACTTCTCAAACATCAGCCCACACTCATGCACGTTTCTTTAAGGTTTACAGTGAAGTGCTGTCAAGTCCATAACTTCATTGATGAGGTTTTACTTTTTCCAGTTTTTTGATCCATCATTTTATCCACGTTTGTCAAATGTTGGAAGGGTTTTCTTCGGAATAACCTTAGTGGGGAAGGAGTTTCTTATGAGAGTTGTCCCATTCACCTACGTAATGAGATTCCTTAATGTATGTGGACGTCACAAAGTGTCTCCCTGAGATAATTTTCAAGCCTCACCTCAAACAAATAGTACTAAGACAAGTTTTCAGGCTTAAGTGGACACCGGCCATATGACATCTTGTGTCGTCTATACAAAGCGGCTTGAATCTTATCGGCAGCTGTATTGGACATTTTTCTCTTATTGAAAGAGTGTCACTGAAAGATTTGTCAGAGGAAAGGGAGGTTGAATGCAGCGAAAAGAATTAAGGGGGTGGATGAGGGGACAAATGAGAGAGTCTTTGTTAAGCGTCGTATTCACCCTTGTCACACGGCGGCCATATTGTCCCGGGAGACCAAAAGAGCTTTGTTTTACCACGCTAAGCCTCGCAATGGAAACCATGGGGATGAGGCTTAGCGTGGTAAAACAAAGCTTTTTTGGTCCCCCGGGGCAATATGGCCGCCTTGTGACAAGGGCGAATTGCCAACTAAGGCGGTTCGTTGTTAGTTGTTGTTCCTGTCGACCTTTCGTCGTTCACTTCATCGGCAATAAACAAAATGATAATTTTCGTTTCTCTTTTGACGAGAATACATTGTTTAAGTCAATTCTTATTTTTAAACATGAAGCTTGTTGAATTGGGAGAAGGGGAGAATCGTTAGTGGTGGTTTTAAATTAACAATAAAGATGTAAACTAAAT

Protein

Uniprot

Gene family

Uniprot term	Description
Q5BK32	FAS-associated factor 2 OS=Rattus norvegicus OX=10116 GN=Faf2 PE=2 SV=1
Q3TDN2	FAS-associated factor 2 OS=Mus musculus OX=10090 GN=Faf2 PE=1 SV=2
Q96CS3	FAS-associated factor 2 OS=Homo sapiens OX=9606 GN=FAF2 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|UBX

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001012	Domain	UBX domain	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18726	FAF2, UBXD8; FAS-associated factor 2	-	Messenger RNA biogenesis	ko03019	deepkoala