Gene detail

Detailed information of aflo_s0035.g195.t2 in Acropora florida

Genomic Location: sc0000035_pilon:3190724...3197050
NR annotation: XP_015753680.1, PREDICTED: homeobox protein goosecoid-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
P54366	Homeobox protein goosecoid OS=Drosophila melanogaster OX=7227 GN=Gsc PE=2 SV=2
P53544	Homeobox protein goosecoid OS=Danio rerio OX=7955 GN=gsc PE=2 SV=1
P53545	Homeobox protein goosecoid OS=Gallus gallus OX=9031 GN=GSC PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR051440	Family	Goosecoid-like homeobox	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46643	HOMEOBOX PROTEIN GOOSECOID-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09324	GSC; homeobox protein goosecoid	-	Transcription factors	ko03000	deepkoala