Gene detail

Detailed information of aflo_s0035.g83.t1 in Acropora florida

Genomic Location: sc0000035_pilon:1500217...1515549
NR annotation: XP_029205787.2, LOW QUALITY PROTEIN: H2.0-like homeobox protein [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0035.g83.t1

CTTTGTATTCACCTAACACTGATCTTGAACTCGCAGCTCCGTCGTCACTGATTCCTTTCGCTGAAGATACGACAAAGGCATCGGCGTCGACACGGAAGCGTTCCTGCGAAACACAGAATGGCGTCTTTTCGCATTGATGATATTTTATCTCGACCTCACAGCTCCCGCTCCGAAACAAGCAGTGGAGTTAACGGAGTACCTTCAGCTTCCCATGTGCCGAGTTATCAACACTTAAACTTCGGTGTAGAACAGATTCTTGGGAGACATGAACCTGAGCAACGAACCGAACGCTTGCCTCTACTTGGCAGTTACTCAATGGTTCCAAATGGTTGCGATCACCTCCAAACAACTTACTACACGTCACCCTACCTAGCTGCACATGCTCAACCCTTTCTCTGTGGATCCCTGCTTCATCCTAGTTGCGATGCGTGTTACGGTCGCACTCCTTATTCATACGGCTCAATATCAGGACTTTACAACGACTACAGTTCAGCAGTCCTCAATAAAAGCATGTCAGGACAAGTCTTGCCCGGCCAACCAAAGCCGAGAAAGCCTAGGAGGCCCTGGACAAGAGCGGTGTTCTCTAACCTCCAAAGAAAAGGACTGGAAAAGCGCTTCCAGCTTCAGAAATATTTAACAAAAGCAGATCGACATCAGCTTGCATCCATGTTGGGACTATCAGACAACCAAGTGAAAGTCTGGTTTCAAAACAGACGTATGAAATGGAGGCAAGATGCCAGAGAGACAATAACCACAGGAAGCCCAGCAGATTCTACAGACAAACCAGAGCAATAAGTAGTAGCTTCACGGCTGATTGGGTGGACGGTGGTCTCTAGTGTGAAAGCGTAAACACGATAGAGAGTGTAAAACGCGGTCTTCATTTACGGCTCCTTTCACTTACGGCTCCTTTCCGTCCCTGTACTTCAGCTGTCTTCGCTTTCGCAGTAGACCGTACATTTCTCCGTAGAAAGTACATTTTACCGCACTTCTACTCACCAAACCCATTTCGTGTAATATTGTACATAAAATTCGATGGTGATCTTGTTAACTTTGTTAAGacagtagggtttatgttcgcggggaaaaatgtgttctggactcgactcagactcatttgagtccaagccctttggcgaggttgaaatgagctctgagaagggcccaaaatatatttatctccaagaacataaactattttactattgttatcactttggaaggcattgtgaaaagaaaaagtgaaacagtcttacggatatttctttcgccaatgttgtgagaaaacggcaacaaactctgtaatggcttctccattttgattggctgcttacatcgtacgattatttgattctcacttttcattggttcatttcagcggattaaaatacattgtaggccaccaaattctccattttagcaaacaaaatgcaccacaatgcccgacatagtgataacaatCTATTATAGAGACTAAAGCCCGAAACAATCGACCGAAGTCAGGTCTTTGAAAATCAGGTCCCAAACGGGGACAACCATTCTTGGTGTTTCAAGGAAGTGAAGCCATGTTAAACGAGGAAGTTAACTGGATGGGTGACCACTCGGGGAAAACCCCAACCCAGTTTCCTCCTTCAGCGAAGTTGATCTTGACGTGACGGGCAACTTTTGCCACGTATAGATGTAGATGTTTTTCATCTTAAATGACAGGAAGTACGCCAAACTCCATGAACTGACCTTCAGCAAACTCTTCTACATTCAGTTGTTATACACTTGTTATCGATATTGCTAGCGTAATAACGAGCTCTTAAAACCAGAAACGCTTAAGGCACAGAAACATCAAACGAAAAAAAAGGACTTTCATACTAAGCCTGCTTTCCAGGCTTCCCTATGCAAGCGGAAAACTTGGAATTAGTATATAGAAGGTTCAGAAGTCTCTCGACCTAATTCTCGCGCGAACAGCTTGAAGAAATGCCATGCTCGATGCTAAGCTGCTTACTAACAAACAGTTACACTCAGTAGGTTTGCCCACGGACTTCAATAGTTGTGGTTGAAAAAAAATCGAATTTCTGTTTGGTTATTTATTTTTAAGACACTTAATGAACAATTTTTTAAACCTCGGGTTTGTTTTAATTGGATTTTTTAAGAAATCACTGCAAAATGAAAACAAAGGAAAGACTTTTGCTTCGGCTGACTTCGTGTGTGAAATGTGTGAGATTTGTCCAGAAATAACGTTATGGGCATGAACTTATTAATAAAAAAATGATTTGCAA

Protein

Uniprot

Gene family

Uniprot term	Description
A0JPN1	H2.0-like homeobox protein OS=Rattus norvegicus OX=10116 GN=Hlx PE=2 SV=1
A7MB54	H2.0-like homeobox protein OS=Bos taurus OX=9913 GN=HLX PE=2 SV=1
Q14774	H2.0-like homeobox protein OS=Homo sapiens OX=9606 GN=HLX PE=1 SV=3

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR052497	Family	H2.0 Homeobox Transcription Factors	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR000047	Conserved_site	Helix-turn-helix motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46808	H2.0-LIKE HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09339	HLX1; homeobox protein HLX1	-	Transcription factors	ko03000	deepkoala