Gene detail

Detailed information of aflo_s0038.g37.t1 in Acropora florida

Genomic Location: sc0000038_pilon:1075862...1085549
NR annotation: XP_029199275.2, alanyl-tRNA editing protein Aarsd1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0038.g37.t1

GACACCACACTTTCTGATGTTTTTAGCCCATAGATTGACTGTTACTTCGATTACTGTACGCATTTCTTTCCTTATTCGGTGTAACCCCTTCACAACACGTGCTCCAATACAACGAAATACAAAGATGGTCTTTGCCTGTCAGCAAGATTCTTTCCTCAAACATTTAAAGACAAAAGTTTTGTCATGCAAGGGCAGTAAGCTGGCCGGCAAGGAAGCTTTTGAAGTCATACTTGAGGATACCGTGTTATTTCCTGAGGGTGGTGGACAGCCTGATGACCATGGAACAGTGAATGGTGTTGAGGTCATGAGGGTGATAAGAAGAGGAGCAACTGCAGTGCATTTCCTTCCACAAGCAATCCCTGAGGGAACTGAGGTAGAGCTAGTTGTTGATTGGCCAAGAAGATTTGATCACATGCAGCAACATTCAGGGCAGCATCTGATCTCAGCAATCATTGAAAACAACTTTGGCTATGAAACAACATCATGGGAGTTGGGGAAACTGCGTTCTCACATTGAACTCAGTTGCAAGAAACTGACTGCAGAAGAAATGGATTGTATAGAGAAAACAGCCAATCAGATCATCAGGAACAGCACACCTGTCAATGTACATGTGCACCCAAGTGCCGCATGCCCTGATTTGAAAAATGCATCAACCAGAGGTCTCCCCGATGATCATGTGGGTCCTGTTAGGGTTATTGAAATACCAGGTATTGACAGAAATATGTGTTGTGGAACTCATGTCAGTAATTTAAGTCAAGTGCAGGTAATTAAACTGTTTCCAGACACTGAATCAATGCGAGGTGGAACAAGACTCTTCTTTCTTGCAGGAGACAGAGTTTTGAAATACCTTGGGAGAGCATTAGACAATGAGAAGTCTTTGACAAAAATGTTAAGTGTCGGACCAGATGAACATCCCACAGCTGTAGATCGCATTCAGACTTCACTGAAGTCTTTAAATAAGAATGCCAAGTCTCAGTTGAAAGAACTTGCTCAGTTAGAAGCTTACCAGCTGAAGGCTTCTAGTGAGGAGAAAAGATACTTCTACATCCACAGAGAAAATGGAGACATGGAGTACATGAATACCTTGGTCAATGGACTTTCAGATCAACATCTTCCTGTGCTGGTAACTGTTGGACCTGATAAAGGACCAGGCCAGTTCCTACTGGTTGGAGAGGAAAAGCAAGTGTCTCAGATAGGACCAAAAATTGCTTCTGTCCTGGAAGGAAAAGGAGGAGGTAAAAAAGGTAGATACCAAGGGAAAGCCAACACATTGAAGGCAAGAAAAGAAGCTGAAGAGTTACTCGTTCAGTTTACTTCTGTGTCGATAAATGAAGGATAATTTTTCTTTTTTACTTTACTTAAAACGCTTGTTCTCCAAGCCAAGCGATTGATTCAGAATGTCACTACCCTCTAAATTATATCCGCGTTGCTTGAAGCCTGCTTATGGTGTCAGCCATTTTTTCAAGAAACAGTTAAGGAAATTGTAAAAGAGTGTCAAGGCGTTTAAACAGGGTTAGTTCTTATCATGCTTTGATTGGGCTACTTGGCCCAGTTTACTGCTTACGTGGCCCAGTTTACGTCTGCGAGAAAGCAGGGTTTAATACGTCTTTTTGCCTTTTTTGCTGGAGGTGGCTTCTTAGGACGTATGATCCTGACTGCAGAAGATGTGGACATTACGAACCATCTTCATATTTCTTTGTTCCACTTTTCTCTTGGACTCTTAGGATTGTCCAACCCTTAGAGCTAAAATTATTCTGTGTGACCCAGAAGTAGTTACGAAAAAGAAACAAATACTAAGTGGAAAAATTTAGTTTAGTTTAACGCCCCGCCTCACTTAGAAAGTTACAAGCAATTGTGCTTTCAAGAAATCTCGTGTCATCATGGCTTTCACTCTAGGCGATATCCTTTTAAGTTATTGAGGTTAAGGAGGTTGATCCTTGAGCATTAGTTCAGTCAGAAAGTCTATTGAAATCTTGAAATGAAAAGGGGGTGTATGTCATTTTGTCAAAAATGAACTTCTGAAGGATGCCAGAGAGCTTGTGAGTCCTCAGCAACTAAACTTTTCCTTCAAGAACGTATCAAAATAATTGCTTTTATTTGAAATCGTAGTTAAAATTACATTTTGTTTTCATAAATTTATACGTTTCCAAGTGGAAACAGAAGTAAGATAATACATGAAATTCACGAGC

Protein

Uniprot

Uniprot term	Description
Q6DEJ5	Alanyl-tRNA editing protein Aarsd1 OS=Danio rerio OX=7955 GN=aarsd1 PE=2 SV=1
Q7ZYJ9	Alanyl-tRNA editing protein Aarsd1-B OS=Xenopus laevis OX=8355 GN=aarsd1-b PE=2 SV=1
Q3THG9	Alanyl-tRNA editing protein Aarsd1 OS=Mus musculus OX=10090 GN=Aarsd1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07973	tRNA_SAD	Threonyl and Alanyl tRNA synthetase second additional domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR018163	Homologous_superfamily	Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily	Interproscan
IPR012947	Domain	Threonyl/alanyl tRNA synthetase, SAD	Interproscan
IPR018165	Domain	Alanyl-tRNA synthetase, class IIc, core domain	Interproscan
IPR051335	Family	Alanyl-tRNA Editing Enzymes	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43462	ALANYL-TRNA EDITING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0043039	Biological Process	tRNA aminoacylation	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004813	Molecular Function	alanine-tRNA ligase activity	Interproscan
GO:0006419	Biological Process	alanyl-tRNA aminoacylation	Interproscan
GO:0002196	Molecular Function	Ser-tRNA(Ala) hydrolase activity	Interproscan
GO:0006450	Biological Process	regulation of translational fidelity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07050	AARSD1, ALAX; misacylated tRNA(Ala) deacylase	EC:3.1.1.-	Transfer RNA biogenesis	ko03016	deepkoala