Gene detail

Detailed information of aflo_s0081.g6.t1 in Acropora florida

Genomic Location: sc0000081_pilon:94666...103640
NR annotation: XP_029201212.2, exosome complex component CSL4-like [Acropora millepora]
Species abbreviation AFLOR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

aflo_s0081.g6.t1

GATGAAAAACTGAATTTGCCGTTAATTTGTCAAGATTTGAGGGATTTGATATGGTTTCTATCGATGAAAACTCTATTGCCATTCCGGGAGAGAGACTGGGCAGTTTGGAACAATTCACTCCTGGTAATGGTACTTACGTTCGCCATGGATATTTGTTTTCCAGCCTTGCCGGTTACAAGCATGTACTACAACAGCAAAACGGAGAGGGAAGAGGAAAAACATGTGGTACCTGAGGTTGGGTCAGTTGTCACTTGCAAGGTGATAAGCACAAACCCCAGATTCTGCAAAGTGGCTATTCTGGGAGTGGAATCTACATCTCTGAAAGAAACATTTAAAGGAACAATCAGAAAGGAAGATGTTAGAGCTACGGAAAAGGACAAAGTTGAGATGTACAAATCATTCCGTCCTGGTGATATTGTAGTAGGACGTGTTTTAACTCTTCATACCCAGACATATCTTCTCTCAACAGCTGAAAACGAACTGGGAGTTGTATTCGCTAAGAGTGAAGCTGGAGCAGCAATGGTTCCAGTGAGTTGGTGTGAGATGCAGTGCCCGAAAACAAAAGCTAAGGAGTACAGAAAAGTTGCCAAGGTCCAATCAAGACAATGAGACATTTTTCAACTTCTTAATTCTAGTGGTTGCACTTTTCATTATATTCAGCACTCCAAGTTCAGCCAACATTAATATCTCCTTACTGTACATTGAAATACAATTTGAAAGTATGGAAAATACAGGAAAAATCAGCTCTGTTACCTAGGATACAAGTCACGCCATTTCGTTTCTTTGAATAATTTATATCCTCAGTACTGTTTTGCAACTTAGATACCCTCCATTTCTAAAAAAAAGTATTTTTTAACTTAAGTTTTACTCTTGATTATTTCGTGCATTCATACAATTCAAAGATTTTAACACAAGATTTGTTTTGGTCACAAATTAGCTGAGATTGACATTCTCCAGCAAGGGATTTTGAAAATGCGTTTAAGGGGTCTAAAATTGTTGAACCAGTCCTTCAAAAGAGAGAAATTCTCCAGTAATGAAAAAAAATGGGCAAATTGGATTTTCAAAGTTGTCAAAGTGCTGTTTGTTGTAGTAGTACTATGCTAAACCAGGCAAACGGATTATAAACTTATTTGGAAAGTGATCTTCCTTTTTCTGGTGGGTGTGGTTGTACAGAGTTTTTGCAGCTCTGCTTTCTGGACAGGTAAATTTACTGGTAGATCTGGTCGATGTGCCTTTTACTGGAGAATCGGTTGATTTTCCTTACTTGCTACTGCAGTTCTTGTCCATTTATATTCTTTTTTCCTGCTAATTGTATGAAGTAACTAGCCAAAAATTCTTGTGAGGTTCTAATACTCAGAATACATAAAAGGAAGGCTACCGTGACATGGCACTTTTCTGTCAGTGATATCGATTGCCTAATAAACCCCACAGGACATCGCTTGTGAAACGAGAAGCGGTACTGGTTCCATTAGTTCAAGGGTCTTTGGAACTCCAACACAATATCCGGTATGAATATTGGCCTCAGCCTCCATCGTGTGCGATTTGACAAACGCCACATTAAAACTACGCTCGGCTTAAATACTTCATTTAGGTTAACAGGAAGGACAAGAGCGAGTAGGAGCAAACAAGCCAGACTTTCAAATGTGATACATTGTGGAAAATTTCAGCGTATTAAGCTAGTTAGAGTATGATTCCGTGACTCTTGAGATTTTCTTATGAGTCTGTGCAAAGCCCTCAATAAGGACGCCTCGAGGCTATGCAAACGCACTCGCTAAAAATATCCTGTGGGTCCAACTACCCCACGGCGTGCAAAGCGAGGAACTTTGATTCACTGATGTTACCGGACTAACGCTGTAAACAAAGATGTAAGAAAAGGTTGAAGTAGAGCAGGAATATGCAGTTGACGGTGATTTCCGACTGCTGAAATGGAGTCGTGGAGTTTGCGTGAGTTTTGGTTTTCATGATGACGCACGCCCTTGAAACTCTCATTCCGCCATGCAACGGTGCGTCTTGTGGCCACAGTGAAAAAATATCAGACATCTTGCATCTAAATTTGCAAACGGGCTGCGTCAGGCTTAACTCACGATACATACTAATGTAGTCATCATACCCTTATATAGCAGCCAGACTACGTCAAACTCTAGTATCGCTATCTTCTAAAAAAGGTAGTGATTTGTATATTTACTGTGTTTTTGATGCGGTGTAAGGGCCGGATTTTCAAGTTCTTTAACTTAAGTGTAAAAGTTTGATTACAAACGGATGTTCGCTTGAGTGGCCAACAGAGAATTTGCAAATGCTAATTGGCTACAGAACGTGGCAGCCTCGGGGCAACTAGGATATTTTCCAAGTTCAAAATGCATGGCTACAACTTCCTTAGATATTGTTGAATTGACTTCTACTCTCGCGTAACAATTTCACCACTCAGATATCTAAAAAGTAAAAAATTGTGTTCTTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DAA6	Exosome complex component CSL4 OS=Mus musculus OX=10090 GN=Exosc1 PE=1 SV=1
Q9Y3B2	Exosome complex component CSL4 OS=Homo sapiens OX=9606 GN=EXOSC1 PE=1 SV=1
O59821	Exosome complex component csl4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=csl4 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006120 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10447 all species →	EXOSC1	Exosome component EXOSC1/CSL4	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039771 all species →	Family	Exosome complex component Csl4	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR019495 all species →	Domain	Exosome complex component CSL4, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12686 all species →	3'-5' EXORIBONUCLEASE CSL4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000176 all species →	Cellular Component	nuclear exosome (RNase complex)	Interproscan
GO:0000178 all species →	Cellular Component	exosome (RNase complex)	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07573	CSL4, EXOSC1; exosome complex component CSL4	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.