Gene detail

Detailed information of aflo_s0083.g10.t1 in Acropora florida

Genomic Location: sc0000083_pilon:391875...396841
NR annotation: XP_044171550.1, uncharacterized protein LOC122955859 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aflo_s0083.g10.t1

atgcgagtggtcgcgtcgccgcgccgccgatcctgccatccgaaccttcttgcaatcgcaccagacccctccaccgctcgatccgcgcgacgccttcttcgtaccaacgcctaccaactctaccgacacgtggaaggtgacgaacgcatcctctactacgatttcaagagcctgtacccttacgtcaacaagtactgtcactatcctatcggtcatccccagatcatctcccaaccgcctctcgaccaagcctcgacgcgtacttcgggctcgtgtgttgtaccatcttaccactcaccgatctgttgcatcccgtcttgccgtaccgatgcagtcagaaactcacgttcccgttgtaggacgcgtgcgtccgccagtacatcgatgccccgttactcgacaagaacgtcgacgactgtcatcacaccgacgcccaacgcgctctcaccggtctaccattttcccgacacgcaagtcggcctctttgccgagtacatcgacacgtggctcaaactcaaggaagaagccagcgggtatcccgagcactgcaccacaggacaccttcaacgcgaacacgtccgacgatggaacgaacgcgaaaacatcgtcctccaccctgccaacatccgcaaaaaccccggtcaacgtgctctggctaaactcatgctgaattccatgtggggtaaattcgggcaacagaccaacaagacacaagtcaaagaatttatcgatccaccagacttctggcagttcctggacagtagcgctcacaacgtgcgctgggtcagccccgtcaccgaagaacaggtcgaaatccactacaagatgcaacaccactgcgaatccgattcgcccaatctcaacatcttcgtggcctgcttcaccacctgccatgccagactccttctctaccgcgccctcgatcatctgggtccccgggttctctattccgacaccgattccgtcatcttcgtccaaggacccgacgatccgcccgtccaacctctgctcggtgattttctcggcgatttcaccgatgaactcgacccaggcgaccacatcgtcgaattctgttccggaggacccaaaaactacggctacatgaccgcccgcgGCTGGAGAAATGAAGCACATGCACCCCAAGGTGGAGTTGGACTTCTGCTAATTCAGAAAGCAAGAAAAGCTCTGCGGAAAACCAAGCGAATCAGCAAAAGAATCATGACGGCTGAATTTGATGGCAATCGTAAGACTACTGTGATTGTTGTTGACGCACCTACGAACTGTGCAGATGAAGTTGAAGTCGAGGAATTTTACAACGATCTGAGAAATACCCTGCAGGATGTCCCAGCACATAACTTTCTTGCTTGTATTGGAGATTTCAATCCAAGACTAGGGCCGGATGCAACCAACAGAAATGGAAAGTACCTCGTAGAATTATTATCTGAGCACAATCTGATAGCAGCTAACATTCAGTTTCAGAAACAAGTAAACTGTGGACCTTCACGGGCGTATGGGATTCCACCTAACCGATTGCAAGCTATTGAGAAGATGTATACGAGCACAAGGGCTAAAGTTATTTCACCAGATGGAGAATCAGAGATGTTCGACATCACAACCGGAGTACTGCAGGGTGACACATTCGCTCCTTTCCTGTTTATAATCGTGCTAGGTTATGCTATGAGAAAAGCTATGGCTGGGAAAGAAGAAGAGCTGGCATTTACCGTCACTCCTCGAAGATCAGGAAGACATCCTAAAGTAGTTCTTGCTGACTTAGACTTCGCAGACGACATAGCACTACTGTCGGATGAAATAGCTCAAGCTCAAAAATTACTGCTAACAGTAGAAAAAGAGTGTAAGAAAGTTGGCCTTGTACTGAATGCTAAGAAAACAAAATCATTTACTTATAACATTGATGAACCAACTCCATTACATACATTTGATGGCACTTATCTGGAATGGAAGGATGACATCAAATATTTAAGGTCATGGTTTGATAACTGGAAAAGACATCAGCATAATATAAGGAAAGCACAGGCTTGGAGGGCTTTGAATGGTATGACGATAAATATGGTAGTCCAATATGAGTAA

Transcript

aflo_s0083.g10.t1

ctacgaattcgacgggtgtttctggcacggttgcccgacgcccgcaacgtcacgaaccgcatcctagactcctcggtcgtaccatggacgacgtctttgccctgcgtcaacagaaacacgatcttcttcgccaacacggctacctcgtccgatcgatctttgaatgcgagtggtcgcgtcgccgcgccgccgatcctgccatccgaaccttcttgcaatcgcaccagacccctccaccgctcgatccgcgcgacgccttcttcgtaccaacgcctaccaactctaccgacacgtggaaggtgacgaacgcatcctctactacgatttcaagagcctgtacccttacgtcaacaagtactgtcactatcctatcggtcatccccagatcatctcccaaccgcctctcgaccaagcctcgacgcgtacttcgggctcgtgtgttgtaccatcttaccactcaccgatctgttgcatcccgtcttgccgtaccgatgcagtcagaaactcacgttcccgttgtaggacgcgtgcgtccgccagtacatcgatgccccgttactcgacaagaacgtcgacgactgtcatcacaccgacgcccaacgcgctctcaccggtctaccattttcccgacacgcaagtcggcctctttgccgagtacatcgacacgtggctcaaactcaaggaagaagccagcgggtatcccgagcactgcaccacaggacaccttcaacgcgaacacgtccgacgatggaacgaacgcgaaaacatcgtcctccaccctgccaacatccgcaaaaaccccggtcaacgtgctctggctaaactcatgctgaattccatgtggggtaaattcgggcaacagaccaacaagacacaagtcaaagaatttatcgatccaccagacttctggcagttcctggacagtagcgctcacaacgtgcgctgggtcagccccgtcaccgaagaacaggtcgaaatccactacaagatgcaacaccactgcgaatccgattcgcccaatctcaacatcttcgtggcctgcttcaccacctgccatgccagactccttctctaccgcgccctcgatcatctgggtccccgggttctctattccgacaccgattccgtcatcttcgtccaaggacccgacgatccgcccgtccaacctctgctcggtgattttctcggcgatttcaccgatgaactcgacccaggcgaccacatcgtcgaattctgttccggaggacccaaaaactacggctacatgaccgcccgcgGCTGGAGAAATGAAGCACATGCACCCCAAGGTGGAGTTGGACTTCTGCTAATTCAGAAAGCAAGAAAAGCTCTGCGGAAAACCAAGCGAATCAGCAAAAGAATCATGACGGCTGAATTTGATGGCAATCGTAAGACTACTGTGATTGTTGTTGACGCACCTACGAACTGTGCAGATGAAGTTGAAGTCGAGGAATTTTACAACGATCTGAGAAATACCCTGCAGGATGTCCCAGCACATAACTTTCTTGCTTGTATTGGAGATTTCAATCCAAGACTAGGGCCGGATGCAACCAACAGAAATGGAAAGTACCTCGTAGAATTATTATCTGAGCACAATCTGATAGCAGCTAACATTCAGTTTCAGAAACAAGTAAACTGTGGACCTTCACGGGCGTATGGGATTCCACCTAACCGATTGCAAGCTATTGAGAAGATGTATACGAGCACAAGGGCTAAAGTTATTTCACCAGATGGAGAATCAGAGATGTTCGACATCACAACCGGAGTACTGCAGGGTGACACATTCGCTCCTTTCCTGTTTATAATCGTGCTAGGTTATGCTATGAGAAAAGCTATGGCTGGGAAAGAAGAAGAGCTGGCATTTACCGTCACTCCTCGAAGATCAGGAAGACATCCTAAAGTAGTTCTTGCTGACTTAGACTTCGCAGACGACATAGCACTACTGTCGGATGAAATAGCTCAAGCTCAAAAATTACTGCTAACAGTAGAAAAAGAGTGTAAGAAAGTTGGCCTTGTACTGAATGCTAAGAAAACAAAATCATTTACTTATAACATTGATGAACCAACTCCATTACATACATTTGATGGCACTTATCTGGAATGGAAGGATGACATCAAATATTTAAGGTCATGGTTTGATAACTGGAAAAGACATCAGCATAATATAAGGAAAGCACAGGCTTGGAGGGCTTTGAATGGTATGACGATAAATATGGTAGTCCAATATGAGTAAAGATTCTTCATAGCCACCATCGAATCAATCTTACTTTATGGGTATGAGAGCTGGGCTCTGTCAAAAGCACAAGAAAAGTCGTTGGATGGAACATACACAAGGATGCTAAGAAAAGCTTTAAACATCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR023211	Homologous_superfamily	DNA polymerase, palm domain superfamily	Interproscan
IPR006172	Family	DNA-directed DNA polymerase, family B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33568	DNA POLYMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003887	Molecular Function	DNA-directed DNA polymerase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22210	DGLUCY; D-glutamate cyclase	EC:4.2.1.48	D-Amino acid metabolism	ko00470	deepkoala