Gene detail

Detailed information of aflo_s0084.g6.t1 in Acropora florida

Genomic Location: sc0000084_pilon:66018...69665
NR annotation: XP_044165570.1, uncharacterized protein LOC114968887 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0084.g6.t1

ttgtatttctagttcttgaagcataccgtgtaacgcgtagccagcgtctaaaatagctttccatcttgaattaatgtctccgcgtaccgctaatatacacaacctttattacagacgacaggaaccgacgacaaatgttcttcacgaggggaatttgacattcaaatccgacgatacggtagggcattattttgaacaccaatttggcccgagggggcgggaatttgaaacgatccaatcttcaagagttcaaatgcccgggctttgcccggagggggtgttgaagtttcgatttgatcggtgcatTATATTTCGATGTAGAATTCCGCTGTCACTAAGCCAAGTGATACAGGTTTTAATTTCTACTCAACAGAGCTATCTCTTTGTGTGAAAGTTGTCACAAGCCTCTAAAGGTGTTTGTTTTAGAATTAAGTGTCGTTTCTACTAAAGATTATGCTAATTTCTGAGAACTTCTCTTAGAGTTTGTTTTAGACATTTATGGCTTGTTTAAGATGGTACTCGATTGTTTCACCTATTTGGTTAAAAATTTCTTATTATCGGATTGTTCTTTTTGTGCTAACCATGTCAGCGATTGTGACATCTTTGCTCAAAGCCGTAGTGGGTTTACTTGTTAACAAGGCCAGAGATAGTGCAGCGGAAAAACTGAAGGAAGGCGATATCTCGGACCAGAAAATCCGAGAGCTGATCCAACGAGAGATGAACGACATCAAGTCAAAATTGGATGCATTGTCAAGGAAGGATCTCCTATCCGCTATAGATGTTTTTGAAGTCGGTGTACAGTATCTGCACCATGCATTAGAAATAGACTCCGTGAACGTCAAATATGCAGCCTCTACAAAAGAAACGCTGATGAACGCAACCAAGGCTCCTGCTCCCACTGAATCCATCGAACCGGCGATACAAAACGTAGGGATCACAGAATTTGGTGTTGAAGCAAAAAACTTGCTTGTTCAGGCAAAAGGGAGATTTAAAATGGCTCGCGAGGAAGCAACCAAAGCGTTCAACAATGAGGCTCTGGACACGCTTCAGCGCATTACTGCTACTCGGTACCGAGTTATGGCAGCAATGTTGGAGTCAGTTGCAAAGAGTCTTGCAGCCACAACGGATTTATCGAGTCTGTCTCTTATGAGTGCTCTACAAAGTGCAACACCAGAGTGTAAACAGAGTCTACGGAAACTCCACGCTTTGCCAGATGTTAAGAAAAACTTTGAAGTTGAGCTAGAAAGGGGTCTCTTCAATATCAGAGGGCGCTTTGGCCGAGATGAACGAAGAGAAATTATTTGCGCCGTTTGTCAAGTAAATCGTTTTATTTATGATGCCCAAGAATTTAATTTTGATCATTATGATTGGGCAGCAATTAAAATCAGAGAGAAATCAATAAATCCTCTGTTCAACAGAGAAGTTGCTGAAGTTTTGGAAGAAGCTGGGATGCAACACTGCTGTGTACGTATTGAATGGTCATTTGGTGACATAGGAGAAGAAGGCCACCGGTTGAAGTTGCCAACACGTATCGCCACCAACACACATGGAGAGTTCCTAGTAGTAGACAGGGATGATAAAACAATCAAGGTGTTTGACAGCCGTGGAAAATTCGTTTACAAGATTAATCCTCAAGTCGACGACACTGTGACATGGTGTGATGTCATTGATATAGCTACTGATGCGAACAACATCACCTATATACTACTGGTTTGGCTGTGCGAGCTTGGGACCTATGGACGCGAAGTCCAGGTTTTTACCAGGAATGACACCAGGAGTGAAATGTGCAACAAGTTTCCTGTGAGTGGGCGCTGGATCAACCGCTTGACAGTTGGCCGTGACAGAGTGTTTGTAAACAATTGGCAAGTGATTGATGTGTATGAGCTTAATGGAGTACCTGTTTGCAGTTTTGGAGAAAGAACGTTATCGGACGTAAGAGATATCGCTGCTGGATCTGATGGTCAAATCTTTGTGCTGGACAGCAAATTTCTCAATAACGAAAAAATCGCCCGTGTATTCAACGAGGATGGTCACCAACAGAACGAATTTAGAGTCGACAGCAAGGAAGATGATTATTGCTGTCTGGCCAGTTATCCATCGGGTGAATATATCGTCCTCTCTGGTTTTGAACGTAAAACAAGAAGACTGAAAGTGGCGATGTATTGCAAAGATGGCGTGTTTAATCGATCAGTTACACTTGGCGAAAGGCTTGGCACTGGTGACGAAAGGTATATATGTGTTCTTATCTTTGGGATTGCAGTGACCAATGATGATAGCGTCGTTATTTGTCTTGAGAATGAAGAGGACCAAAGAAACGTGATCGTTTGTCCTATAAAACATTATTGAGGTTACTATTCTTAATCTGTTTTTCTTCTAAATAGGTAGTAAAATGGGTTTTAACTTTTACATTGCTTAGCAAGCTTAGAGCTTCCCTATGCCAAATTGTGCTCCTGGTCGTTTTTACTTATCTTTGTATCCAATGGCCAATCGCCTTTGGGCGAGAAAACTTTTTAACTTAATGTTAACTTGTAGGGCAACAATAATTCACTTACAAATTTATCCAACATATGTTTTACATTTTTCACGAAGCTCCTTTTAAAGGTGGGTAGCAGCAGGGAAATGAAATTGGTGTGATTAAAGAAAACAAAAAAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan