Detailed information of aflo_s0096.g4.t1 in Acropora florida

Genomic Location: sc0000096_pilon:71490...103865
NR annotation: XP_029191049.2, TNF receptor-associated factor 4-like isoform X1 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
Q61382TNF receptor-associated factor 4 OS=Mus musculus OX=10090 GN=Traf4 PE=1 SV=2
Q9BUZ4TNF receptor-associated factor 4 OS=Homo sapiens OX=9606 GN=TRAF4 PE=1 SV=1
A7XUJ6TNF receptor-associated factor 6 OS=Sus scrofa OX=9823 GN=TRAF6 PE=2 SV=1
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING
Ubiquitin FamilyE3|E3 activity RING|U-box

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02176zf-TRAFTRAF-type zinc fingerFamilyInterproscan
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001293DomainZinc finger, TRAF-typeInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10131TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0033209Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11967ANKIB1; ankyrin repeat and IBR domain-containing protein 1EC:2.3.2.31
Ubiquitin systemko04121deepkoala

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