Gene detail

Detailed information of aflo_s0100.g39.t1 in Acropora florida

Genomic Location: sc0000100_pilon:559605...580939
NR annotation: XP_015764577.1, PREDICTED: neural cell adhesion molecule 1-like isoform X3 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0100.g39.t1

CTAACTAGTTTTCACGTCTGTTGTACCCTTCCAGGTTGTTGACCAGCCATGGAAAAGGTTCTGCTTTTTATTGGGGCTGTGTTAGTGACGATCGTTACTCGATCAGTCAATGTGGGAAATGAATCACCACTGAATGTGCGCCTGGGACAAAAAGATACAGTAAGATTAAATGTTTCATCTTATCCACCTCCCACATATACATGGTCAAAGGATGGACAAGCATTGACCTTTGATTCCCGGCGTACTCTTGATCGATACACAGGAAATATTGTTTTGAATCCTGTCATCCAATCAGATGAAGGCAACTACTCTTGCACTGTGAGATATCGCAGTCAACAACAACCTCACAACTTTCCTGTCTTTGTTGTTGATATTCCCCGTATCAGCAAGCCGCAGGGAGATCCGGTGTATCTTCAAGGGACAGTAGGATACAACATCACATTTCGCTGTGACATCATATCGGGAAAACCAGCGCCATTAATCACGTGGTACATTTCATGGGAAGGAACAAACCAGCCGATTAATTCTTTGTACGACTCAAGGTGGTCCCACCCCACTAAAGAAGAATTTACCATAACTGGTATCCAAGAAAAAGACAAAGACAAATATCGTTGCATTGCAGAAAATGAGGCTGGAAATGATGAGCTGAGGTTTGAGATAACTGAAGTGAGCGTTGCTCCAATGATTGAGATGACGATGTCTCACAGTGAGCCAAAAGAAGGAGACATTGTCAAAATACAGTGCAAAGTACCAGAATCACCAACTCCAACAGTAGCATGGTACAAAAATGATCAGCGTTTTGGAGATACAAAGTACCAAGAAGGATACAAAATTGTTGCTGAAATATCATTTACAAACATCCAATGGAGTGATGGTGGAATGTACACATGCAAAGCATCTAATGGTGCCGTTGATGGTAATAATCAGGAGATTCAAGCGGAGGAAACAGTGGCCATCAATGTCATATCTCCACCCAGACTCATATCACCGTCTGACAATGTGTACACATTCATTGGAAACAGGAAAAATACATCAATACTTTGCACATTCTCTGGATACCCTGTGCCAATGGTTAAAATGTCGAATGACAATGGAACAGTAGTTGCTGAAGGCAATGGCTCCGCTTTGTTTGTTATTCCAGGAACATATACTGACGAGTTCTTTGGAGAATACAACTGCACAGCCGTCAACAACATTAGAACAACAAATATTCTTCTGAGCCTTCTAGTTGCCACAAAGCCTGAGGTTCCACAAAATGTGGTGGTAGAAACAACATGCAAAGACATCAGCCTGACTTGGCAAAAACCCATAAACGATGGAGGAATGCCAATTACAAACTATGTTATAAGTCTACTATCATCCAGTGATCAAACACTGCGTCGAATGAATGTTGACGCCAGTTTGAGTGAAACAAAAATTAGCAAAGAGATTGAAGCTATAACAGCATATAAAGTCTCTGTGTTGGCAAGGAACGATGCTGGATATGGAGATAACAAAACAGTGCCAGCTCAAACCAAAAAATACTGAGTCATTATCAGTCATCAACTTGACATTTCAGGTGTCCCTGATAAACCACGAATTACAAACACGAAAAAAGAAATTGAAAGTAGCTTCACCTTGAAGTGGTTACCACCTACTTATGATGGAGGTGACAACAACATTATGTATCAAGTTGAATGGGGGAAGAAGCCGATAACTGACGAAACAGATCGTTCTGTGGTAGAGAACATTCCTTATACTTCTCGTAAAATAGAAAATCTGGAGCATGGAGTGGAGTATGAGTTCAGAGTGATGGCCAAGAACCAAGCTGGTTCTGGTGAGCCAGATATTATGTTCTTCACGGTGAAGGAATCCACTGGTATGTACACCATTGAAACTAAATATGTGAACTTTGAACAAGAGTTTGAGCTGGGAAATGTGTTACCAAGTATTGTCAAATATTTTTATGATGTTATTTTGTTTAAATCATTATTACATCAATGTTATGTTTCTAAATGACAATTAAATGAAAAAATGCTCCCCTCTTAGAAAAAAAGTAAAAAAGGACAATTAATTCAAAACTTTCAAAGTAAACAAATATTAATATTGACAAGTATTTTTAAAAGAATAAAAAATATTTTTTTTA

Protein

Uniprot

Uniprot term	Description
P68500	Contactin-5 OS=Mus musculus OX=10090 GN=Cntn5 PE=1 SV=2
P97527	Contactin-5 OS=Rattus norvegicus OX=10116 GN=Cntn5 PE=1 SV=1
O94779	Contactin-5 OS=Homo sapiens OX=9606 GN=CNTN5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0043005	Cellular Component	neuron projection	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06491	NCAM, CD56; neural cell adhesion molecule	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala