Gene detail

Detailed information of aflo_s0121.g38.t1 in Acropora florida

Genomic Location: sc0000121_pilon:526505...542840
NR annotation: XP_015750835.1, PREDICTED: uncharacterized protein LOC107330788 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0121.g38.t1

GCAGTACAAGGGCCGACTGAAAACATGGATTCGTACGTGACGCGTTTACGAAGCCTTGCAAAGTCTTGCGAGTATGACAATGTAGATGAAATGATTCGAGACCAAGTGGTTGATAAATGTGCCTCGAACAGTCTTCGCCGTAGATTGCTTCGAGAAACTGACCTCACACTGGATGGGCTTCTACAGATCGCTCGAACAATCGAAGCATCTGATCTACATGCTGCTAAAATGGAGGAAGCGTCTGATACGTCCAGGCAGGTCAACAAGATTTGTAGTGGGTCTCAAAGATCAAATGAGAAAATCAGGGGAAGTTCGCGGTCGTGTCGACCAAAGAATGCGAGGAATTCACGAGCACCGAACCATGACAAGAAGCCAGTTGTCTGTTTTTGTTGTGGACGTTCGGGTCATCGCGCAAAAGATTCTTCTTGTCCTGCAGTCGGAAAAACTTGCAGTAACTGTGGAAAGCAAGAACATTTTGAAGGAGTTTGCAAAAGCGCTCCGAAACGAGTCACTGATTCTCCGAACATTGCATACCAACGGAATGCAAATAGACCTCGGTATGTGACGGTTGAAGATAATACGGACTCTGATGACGAGTATTTGTTTGCGATTGGGAGCAACATGGAAGACAACACTGTACAAATAATTGTTGAAGGGGAAAGTTTACTGGTGTGTGAAGATGCGTGTACGCGTTGGCCGGAAGTAGCGGTTCTACGTTCCACTACCTCTGCAGCCATAATTGGATGTCTTCGGAAGATATTTGCTGTACATGGGCTTCCGGAAAAAGTGGTGACAGATAATGGAGCTAACCTTGCGTCAGAGGAGTTTGAAAACTTCCTTGAGATACAGGGCATTCAACATCGCAAAGTCACGCCCTACTGGCCCCAGGCGAATGGAGAAGTTGAACGGTTTAACGGAACCATTGAAAAGGCAATCCTCACTGCACATGTTGAATGCAAAGACTGGCGAACAGACATCTTTACCTTCCTACTTAATTACCGTGCAACACCTCACGCGAAGACAGGAGCATCGCCGGCACGTTTGCATTTGGGACGGGAGATCCGAACCAAAGTACCACAAGTTGAAACACGGTTGTCTGGTGCTGTGTCAGCTGCACTACAGTTCGCAAAGGTTAAGGATCAGCAAGCCAAGCAACGCATGAAGGTTTATGTGGATAAGAGAAACAGAGCAAGTGCATCGGACATTGCATCGGGGGACAAAGTGTTGCTTAAGCAGGTCCGGCAGAACAAGCTATCAACGTTGTACGATCCTCATCCCTTCACAGTGCTAGAACGTAGGGGACCAAGCCTCATTCTGCAGCGAGGAGATGGACCTGCAATAAAGAATAACTTTAAAACACTAAAAGAAAGACAGAAGAGAGCGACCACACACATCAAAGTTGAGGAACAAATAATAGATAAACAAACCAAGAGTGTTGTTTCTTCAAGGAGAAATCAAAAGGGCCCATAATGCACCCAAACTACAGGAGGTCCTGACCATAGAGTACATGTCACCAGAAGAAGGTGTGTATGAACCGGACAACTCAGATGAAGAATCAATGCCCAAACTTGAAAAGCTAGTCGAACACAAGTTTGAGTGGACTCAGATCAGATGAGTTAGATCGTGAGTTCCAGAGGCTGAACGGTAAGGCAGATAGGGCCAGGAGTCAGCGAGAAAAAAGGATGATGATACCGAAGCAGGAGGGTGACATGATTCCTGAAATCCCTCGTTCTTATCCGATGAATACCCCAGCCTGGGCCCTTGCTGGTGTACTCCGGAAAGGACCATAATTTTAACAGCAATGATCACAAACTTTTATCACATGGCCAATTTTTTTTTTGTTTTAACCAGGTATATGTTTTGTCAGTTGCATCAGTTTCAAAACTTTCATGTGAATAACATTACGAGAAAAATAGTAACGGTTGCTGTGGTGATTATGGCATAAGACATTCAAATTTTGATAGCTTGATAGTTAATTTTTCGAGCTCAAAATACAGCCTCGGATGCCAGGAGTGTTGTATAGATTTAAAATCCATTTTATTTATATCAAACAGCATTATTTCCAGTATAATTATATACTTTTAACTTACCTGAGTGTACATAGGCTGATTAAAGATATTTATTTATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan