Gene detail

Detailed information of aflo_s0130.g50.t1 in Acropora florida

Genomic Location: sc0000130_pilon:952461...960592
NR annotation: XP_015756623.1, PREDICTED: zinc finger protein 2-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0130.g50.t1

GATCACGTCATCTGAAGCAAGGAGGAATTTTCCTCCTTTAGGTGACTGAGAACTGCTAATGAGCTGCAGTGTGGTTGGAAACAAGGAGCATTCGCCGCGGACGCCACTGTGATATGCCAAAATCCTTCCTTGTGAAAAAGACCTCTCGAATCAAGAGGAAACACGAAGAAGATACATGTGAAGAAAACGAGGAAGGATCAAACTTTGGTGGAGAGGACAGACCAAACGCCATCAACCAAGACATCAGTTCTACCGGCGATGTGGCAATTCAATGCAACCTGGAATCTGGCGCAAACCCCCACGTCCCGCATTCCATTAGTGGCGGGAACCAGCCCACTGCTTTTCCCGCGTTGGACACGCGCGGCCTACACACTCTCGCTGAGCTGTGCTTGCGTCGAGCAGACTACGAATTTTCAACACAGAACGTTGACACAGACAACAAGAACACGAGCAATACCGGATCGCTTGGGACTGACTTCAGAGAGCCCTTTAAACTGCATGTATCGCAGAAGAAAAGGCTTGTTAGCGATTCGGTAGTTCCCGCTTTAAGAAAACAACAAGTTGGACCTAAAGAAAGTGCGGAGGAAAAATGCGAAGACTTGAAAGAAAGGAGGAAAGAAGCACTGCGGCGAGCAAGCAATGCGTCTGATGAAGGCTCTTCGAGACTTCATAAACTTGATGACGAACTGGAAAAAATGTTGCAGGGAAAAGAAGAGATCATTGGGCGAGAGATCAGAGATTTCATGGAAAATAACAAGGCTTTGGAAAATGAGCTAGTTGAGGAGACGGGTGTAACAGAACCAGAACTGATGAAGTATTTGAAGGAGAGTGTACACTTAAAAGAGGACAAAAGAAAGAATCTATTTCGATGGTACCTTGAGAAAAAACTCAGCCGAATGGAATCAGATGACGAGAGCTACACTTGTTACAAGTGCGGAAAGATCTTTGCGTACGAGAGTTACCTGGAGCGCCATGTTAAATACGTGTGCCCCGACAAAACAGGCCGCACCTGGAAGTGTTCCTACTGCAGCAAAGCATTTCAGTACCCTTGTTATTTGAGAAGGCACATGCGTTCACATACAGGTGAAAGTCCTTACAAGTGCACGCAGTGTTCACGTGCATTCGTTCGGTCCACCGACCTTCAAAGACACTTACGCAATCACACAGGAGAGAAGCCCTACAAATGCCAAGAATGTTCGAGAGCCTTTGCACGCTCGACGGACCTAAAACGTCACATGCGCACGCACACAGGGGAGAAGCCTTACAAATGCTGGCAGTGCTCCAAGGCATTTTCCCAGTCTGGCAGTTTACAGACACATTTGCATACTCATTTCAAAGAGTCGCTGCAAATTAAAGGGGTTATACCGGATAAAAACAAACGGAATTGAAATGGCTAAAGAAATCAGAGATTAATTCCTGCGAGCTAGATGTCAATAGCATCCCCTCCAGCAAAGTCATGTACATAAAGTTTCCACCATTGGAATGTGAAGACTGCGCATTTCAGGTTTGTTTTTTGACAAACAGTCATTTACGCGCATGCTCTTCGAAAACAAAGATACGTCTTGACAGAAGATATTACAGATTGCTCGCTGGCGCAAAAGCAGACCACAGCTTGGTAATTCCGATATTTTTTGCTCGCTTACCAAACGAATTCGTCGAACCGATGGGAATTTACAGAAACTGAATATGAGTTTCAGAAAGAAAGACGCACACCATTGCAAGAACGGTGCGAGTTGTAGTTGTGCTATAGGCGCAATAAGATGTATTCATTTCATATGTAGTGGCCTCTTTCACAAGAAATTCAATTCAAAATTTTGTTAATTGGGAGGTGTAAAAAAGTTAACACTATTTTGCTGTTGTGCTCCAATTACTTGTTTTCATGACATGAAGCTGAAAACAAGAATCAAAATGAACAAAATCCTGGCCACCATTTTCTGTAACATTTACCCAGAACATATATCGCGTCTGTTTGTTTGTTTTATATTTTGTTTTTACGCATTGATAAAACCAAAAAAAAAGCTTAAGCAAAACCATCGCGTTAAGGAAAATGCACATTTCGAAATTTTGCCGCATGCAATATATCAAAGTATAGTTTTGTGTATATTTTTGCTTGGGAAACTATTTATTTATGAATATTATTTTTTGCGTAGCTTTGGAAAAAAGAAATGAATACGCTTGTAAGGTTTCTACGAGGCGTTTATGCTCAAATTTATGCTCATTTGACACACAATTTGCTCATGCAGTTTACAATCCCACGAGAGTTGTTTGACAACACGTGATCTAATTACTTCAAACCATGACACCACTAATTGGCTCTTTTGCTTCAAGCAAGTTCGTAGCGAACTCTGGTTTCTTCTTCCCTTGGATGAGTCCCGAAATTCAAAAAACCATGACAATTTCAACTTACTGACACTCGCGAGCTGGACGTTGTGCAAAAATTGCTTGGTTGAACAAGGTTCTGGGGCATTGAGACATTAATTCAAGTTGGCTACTTCAAATTTGTTTTCGTCTGTAAAAATTATAGTAATAGCTGGGTTTCCTTTAAGAAGTACGCAATTTTTGTGGGTTCAAGATGCAAAAAACCTCGCATATCCTAGTTTACCTTACTGGACCCTAAACAACTTCTCTGACATAGTCGTAGGTAAAATGCAATCTTCTTCGATAGCAAGATGAAACGCGTTCATTTTCTTCCATGTCAAACCTTACTTAAACACTGGGAATGTCTCCATCTGCGCAAGCCCACAAAAATTATGCGATTCAAGGGACCTAGTTTTCTTTACTTCATGTAAAACTGTGGACACATTGACCTATCCTACTTGATATTAAAGGACCGTCAATTCA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF13465	zf-H2C2_2	Zinc-finger double domain	Domain	Interproscan
PF04814	HNF-1_N	Hepatocyte nuclear factor 1 (HNF-1), N terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR044869	Domain	HNF-1, POU-specific (POUs) atypical domain	Interproscan
IPR027756	Family	Ovo-like	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR006899	Domain	Hepatocyte nuclear factor 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10032	ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009913	Biological Process	epidermal cell differentiation	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala