Detailed information of aflo_s0137.g10.t1 in Acropora florida

Genomic Location: sc0000137_pilon:53433...55555
NR annotation: XP_015752092.1, PREDICTED: U6 snRNA-associated Sm-like protein LSm1 isoform X2 [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q8VC85U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus OX=10090 GN=Lsm1 PE=1 SV=1
Q5E9Z8U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1
O15116U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens OX=9606 GN=LSM1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01423LSMLSM domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001163DomainSm domain, eukaryotic/archaea-typeInterproscan
IPR034104DomainSm-like protein Lsm1Interproscan
IPR010920Homologous_superfamilyLSM domain superfamilyInterproscan
IPR044642FamilyU6 snRNA-associated Sm-like protein Lsm1/8Interproscan
IPR047575DomainSm domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15588LSM1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000956Biological Processnuclear-transcribed mRNA catabolic processInterproscan
GO:0000290Biological Processdeadenylation-dependent decapping of nuclear-transcribed mRNAInterproscan
GO:0000339Molecular FunctionRNA cap bindingInterproscan
GO:0000932Cellular ComponentP-bodyInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0016070Biological ProcessRNA metabolic processInterproscan
GO:1990726Cellular ComponentLsm1-7-Pat1 complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12620LSM1; U6 snRNA-associated Sm-like protein LSm1-Messenger RNA biogenesisko03019deepkoala

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