Gene detail

Detailed information of aflo_s0148.g7.t1 in Acropora florida

Genomic Location: sc0000148_pilon:157969...172055
NR annotation: XP_044177813.1, tyrosine--tRNA ligase, cytoplasmic-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0148.g7.t1

ATCTTCAGTCTTTTGGAGTCTACACGTGGGAATCAGGCTAGCAAGGAAAAGACACGCTTCTTTTGTAGGATTTCTATGCTTCAGACGTTTAATACATCAAGGTGTCTTGTTAAGAAATTAAGCTTGAATCAACTAGCACGAATCAATTTTTCATCGTTCGTGAGGACACACTTTTACTCTCTGTCTTTGGGAAGAATGGCTTCCACGGGAAATTGTTCTGTTGATGAACAATTAAAATTGATAACGCGAAATTTGCAGGAAGTTATTGGCGAAGACCGTCTACGAACTATCCTTTCGGAGAAACATCTATGTTTGTACTGGGGCACGGCCACAACAGGAAAACCACATGTGGCATACTTTGTGCCGATGATCAAAATTGCAGATTTTCTAAAAGCTGGTTGTGAGGTCAAAGTCCTGTTGGCTGACCTTCATGCTTACTTGGATAACCTCAAAGCACCTTGGGAATTGCTGCAACACAGAGTCAAATACTATGAAGAGATTATTAAGGCAATGCTGGAGTCCATAAATGTTCCTTTGGACAAACTGAAGTTTGTTAGGGGCACAGAATTTCAACTAAGTAGGTAATGAAATAAATACCACATTCTATTCTGGTAATTGCTATTTGTTTGTCATGCCATGTCTGCATTAATTGAAGACTGCTGACCAGAGCCATTTTTCCTCTCTCCAGAGATTATGTTTTGGATGTATTCAAAATGTCAACTGTTGTGACAGAGCATGATGCCAAAAAGGCTGGGTCTGAGGTGGTAAAACAAGTGCAGCACCCTCTCCTCAGCGGTTTATTGTACCCTGGTCTTCAGGCTCTTGATGAAGAATATCTTAAAGTAGATGCTCAGTTTGGTGGTGTTGATCAAAGGAAAATCTTCACATTAGCTGAGAAGTACCTGCCTGTCATGGGTTACAAGAAGAGAATACATCTGATGAATCCTATGGTTCCAGGTCTAACAGGAAGCAAGATGAGCTCTTCAGATGAGGATTCAAAAATTGATCTTTTGGATGGTGCTTCAGCTGTAAAGAAAAAGTTGAGCAAGGCATTCTGTGAAGAAGGAAACATTGAAGACAATGGCATTTTGGCTTTTGCCAAGTTTGTTATTTTTTCTGTTTTGGAATTAAGACATCAAACAGGATTTGTCATTGAAAGAACTGAAGAAAATGGAGGAAACCTGACATTTAAGGACTATGCATCACTTGAGCTAGCATTTGCTCAGAAGGAATTACACCCCTTGGACCTGAAGAATGCTGCTTCAAGCTTCATAAATGATCTCTTAGATCCAATCAGGAAGAAATTTGAAACCCCAGAACTGCAGAAGATTACGAATCTTGCCTATCCTGAAACAAAGAAACCAAAGGGAGGAAATAATGGCCCTACAGCAAAAGAGGTCGATCCATCAAGACTGAATTTGAAAGTTGGGAAAATTCTTTCAGCAAAGAAGCATCCTGATGCTGACTCACTGTATTTGGAAGAGATTGATGTCGGGGAGGAGAAGCCTAGAACAGTAGTAAGCGGTTTGGCAGACTATGTGCCTTTGGAGGAGCTTGAAGGAAGGCTGGTGGTAGTGATGTGCAACCTGAAACCTGTTAAAATGAGAGGTATCTTATCAGAAGCAATGCTCTTGGCAGCCTCAATAACTGGTTCTGAGGGAAAGCGTCAAGTCACTCCTTTGTGTCCTCCAGCTGATTGCAAACCTGGTGATCGAGTTGTCATAAAAGGCTATGAACATGAAATAGCGGGAGCCCCAGATGAGCAACTGAATCCAAAGAAGAAGATATTTGAAACGCTCCAGACCGACCTGCTGACAAATGAAGATGGCGTAGCAGAATATAAAGGCTGCCCTATGGTGACATCCGCAGGACAGATCACTGCCCCTTTGAAGAACGCTCAAATCAGTTAATTTAATCGAATCGCCAGCCGTTATGAATTCAATTCAAACAATTTCAGCTCGCGAATATGTCGACTACTTAACGAACCtaataataataataataataatgataaaattaaATT

Protein

Uniprot

Uniprot term	Description
Q5ZJ08	Tyrosine--tRNA ligase, cytoplasmic OS=Gallus gallus OX=9031 GN=YARS1 PE=2 SV=1
Q5R8T5	Tyrosine--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=YARS1 PE=2 SV=3
Q4KM49	Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus OX=10116 GN=Yars1 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF01588	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR002547	Domain	tRNA-binding domain	Interproscan
IPR051270	Family	Tyrosine-tRNA ligase and regulatory protein	Interproscan
IPR002305	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11586	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0004831	Molecular Function	tyrosine-tRNA ligase activity	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15437	AIMP1, ARC1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1	-	Transfer RNA biogenesis	ko03016	deepkoala