Gene detail

Detailed information of aflo_s0153.g42.t1 in Acropora florida

Genomic Location: sc0000153_pilon:893448...912360
NR annotation: XP_044178747.1, semaphorin-5A-like isoform X4 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0153.g42.t1

ATTTCGATCAGCTTATCCTACAATGGAGGACTATCACACGCAAGACGATTTAGAAGTAGAGATCAATACTGCAACAAGGAAAAGAAAAGCACCGGAGGCAGACAAAACAAAGAAACCAAAATGGAAGTCTGGCGAGATAGAAGCGCTCATAGATGAGCTGGAGAAGCGAAGCTGTCTGTGGGACGTCTTCGGCAAAGACTATCACAACCGCGGAAAGAGGGAAGTCGCTTACACAGAACTGGAAGACTTACTTAATCATAGCAAACAAGATATTAAGGCGAAAATAGCGGGCCTGAGGACGCAACTTGGTCGCGAAATTGCCAAAACGAACTCCTGGAAGTCAGGACAAGCAACCAGTGAAAAATACAAGTCCACGTGGGTGTTCCACGATAAACTACAATTTCTTCGACCAGTAACGCAGGCTGGCAAGAGCAAAGATAACCTGTGCCAGGAACAAGAATTGCTGAATGATACACAGCACGAATTTGATCAGGAATCGCTGTCATCTGCTTCACCGACATGTTCTGAAATTTTGGAACACACTCCAAGGATGAGCAAAAAGGTGAGAAAATCCATGGAGGCCAGGAAAGAAAACTTTCTATCGACTTGCGTCGAAGTGCTTCGAGAGACGACTCGCCCTCAACCTCAATCTGTGCCAATTAAGGAACAGTGTTCATTTTCCAAAAATAGGGTATTTTTAGTGAACTTGGATGATATGAAAAGTTATGGGTATTGGAATGTACCACAACAGCCTGGCGATAACGCTTTTGTCAAGATGATGTTACCTTTTGGAGACAGAATTTTACTCTGTTGGGTTGAAAAGCCATCCACTGGAAGCTGCACTTGGAGAAATGGCGATCGTGGTGGTGAATATCGGCTGTTAAATACTTTTGTAACCTTCCAAAAAGCCAAGTTAATGTGCAGTGATGGGAAGAATTACTCGCTGAATTTTAATGAAATTCAGGATGTTTGGTGGGACAATCGCACAGGCAAATTTTATGCAGCTTTCAGCTCACAGCCGAATGGTCCTGCGATATCCGCTATTTGCATTTACAGCTTGTCTTCAATCAATCGGATTTTCATCGAAAGTGATTTCAAATCTTTCACAAGTGAAAGTAAGGGTTGGACCAAAAAAAGGAATAAGATTGGAGAATACTTTCCAGGCTGCAAAGTGAATCCGACATACCTCAAAAGATCTTATTCGGCCGTTGCTGATGGCGTGATGGCAACAAAACATATGCTGTCATCAGCTTACGTAGACCTAATGCATAACACACTGCTGTCTGATGGAGTGGAGCCAGTTGGATCGAAAGCTTGGTTTATTAGAAACGGGATCAGAATGACTGGCATTTCCCTGGACGTCGTTGGGCAGAATATCGTGGTGTACGCTTCAACAGATCGAGAGTCTGTTGTGAAAATTACACAGCCGCGAGGGATATCTCAGCCGTGTCTTTATTCTGAAATGGAAGTTTATCCTCATAATCTGTACTTGGGGACACGTTATTCGCTTACACAACTGAGTTTGCATCAGTGTGAACGATATCAACACGACAAGAGTGCTTGTATTTCGGCTGCTGATCCTTACTGCGGCTGGGACGACAAAACATTCCGTTGTTCTTCTGTTCTTTTGCATGGGGAGACTCTACAACAAAATTTGACAATCTGCCCAAAAGTCCGCAAAGAAACTAGCTGGTCTTCATGGAGAACCTGTGTTCAAAGCGACGGAAATCTTTGTCGTTGTCAAACACGTAGCTGTCAAGAAAAGGGAAATAAACCACGCCTGGCTGATGTGGAGATCCGGTTGGAAAATTGTACAGATCGAGGATCTGTCGTGAAAATTTCACAGCCGCCAGGAATCTCTCAGCCATGTCTCTATTCTGAAATTGAAGTTTATCCTCACGTTCTGTACTTGGGGACACGTTATTCGCTTACACAGCTGAGTTTGGATCAGTGTGAACGATATCAACACGACAAAAGGTGTGGTAAATAGATCTAAACTAATGCTGGCCTACGCTACATTGGTTGCCAGTTCTTCGCCGCTAACTAGGTTAATAATCAAGGGTTTTTCCATCATTTAGTGCTTGTATTTTGGCTGCTGATCCTTACTGCGGCTGGGACAACAAAGCATTTCGATGTTCTTCTGTTCTTTCACATGGGTAAGCTCTAAATATTCCTTAACTTAAATTAGCAAATAAAGCTGAAATTCCGGT

Protein

Uniprot

Uniprot term	Description
Q9P283	Semaphorin-5B OS=Homo sapiens OX=9606 GN=SEMA5B PE=1 SV=4
Q9W7J1	Semaphorin-3aa OS=Danio rerio OX=7955 GN=sema3aa PE=2 SV=1
Q9W686	Semaphorin-3ab OS=Danio rerio OX=7955 GN=sema3ab PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10545	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan
PF01437	PSI	Plexin repeat	Family	Interproscan
PF01403	Sema	Sema domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR016201	Domain	PSI domain	Interproscan
IPR001627	Domain	Sema domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR006578	Domain	MADF domain	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan