Gene detail

Detailed information of aflo_s0183.g5.t1 in Acropora florida

Genomic Location: sc0000183_pilon:220117...256475
NR annotation: XP_044177248.1, uncharacterized protein LOC114974206 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aflo_s0183.g5.t1

AtgAaatctttcgtgtacaaaatcTGGATAATAAACagtcaaggctgctgttttgcagAacttccaGAgctacagattgttttaacAaacagtgagcaaaccagggaggcaacctgtaaAgtgTatgatTggaagaaaCagcagaagAgattaatgatttgtgaacctaccaTtatggcaacaagcTtaactattTatgccaaaggagcagatAacttaactctttgCgaagtcttggtaacttcggcagATGATAAATTGGTTGCTCATGGTGTCCTCCAAGAAGTTTGGCATAACATCCTTTACTGGAACGTTTACCATTTGCAGTATTACACAAGGTTTCCTGGTGTTCCAGATGAAGTTACAGTTGGTGATCTTAATGATATTAATGACTTTGACACCGATAATTGTTTTTACTCTGGACAACGTCTCACAGCTTATCTGTCGCTTCCAGAAAGTGGAAATCACACTTTCTATGTTGCTTGCAACATTAGTTGCAAATTGAGGCTGGAGGTAAACCCAAATGGCAACCAAATTGAAGACAAAGAGACAGGACTGCTTTTAGCAGAGTTACTGATACAGCAGCCATACAGCAACAGGATCACAAAATCTAAAGAAATTTTTTTAAGTAAGTGTCGCTTGTATCGTGTTGAGATGCTTATGGCGTATAGAGGGAAATACAATGCTTCAATAGGAATAAAGTTACCAAATGGCACCTTTGAAGGACCAATTGGAAAGGACCGATTATTTTGGGTGCGCCCAGgcacctataaatattgttattatgggacttattttcccaattgttcaattgacttgtttctgaagtttgctaaacaaagcattttggtgcagaaggctttaccaatggattgcagagaatacaatttcaatagaagttttaacaccatgttgtggcaggagagaaATTACCAAGTATATGTTTCCTATACCTACGTGGACATAGAGATACAGTTACCAGCTGTTTCTAAAAAAGTTTCTGAAATCTTTATCTCAGgccaaacatgtgatgtcgcagatgtaccaaacttcatttgcccctctggtaaatgtctaaggactgaccttctctgcgactctgataaagattgtgaagatggcacagacgagatgagatgtggcctagggatgggttgttcaaaagacgagttctcctgtgcagatggtggatgtgtttcaagggcactgacttgcaatggagaaaaggattgtgaagatgaaactgatgagccaatgctctgcaaaaaacaagCTGCTTGGGAAATTGAGGACTCTTTTGCTTGTGATACATCATCTAGCACAGCAATCACTGCAACATCGCGAGGGCAAAGTGGACAGATTGCAAGTTTTCCACAAGAAAGAAGAGATTCTGCAGCAGGCCCGTCATTTTGCAGTACTACGCAAGATTCCTCTGAAGATGTAATTGAAGTTCTGAGTCCTGGTGAAGGCTCAGATGGATCCTTGGGCACTGCTGCTGTTTCATCAGATGATCACCACACAGACTTCGAGGCCCAATTTGATGAACTACCCATAAAGCCCATTCTGTTGCACCGGGCCCAGCTAAGACAGGATTTCATTATGAAGTTCAGTGATCCAAACATTTTAAACTTCAAGCTTGATGTTACAATTGTAGATGAAATGGGTAAAGAGGAAATAGGCTCAGGAAATGGTGTCTTAAGAGATGTAATATCAGAATTTTGGAGGTTATTTTTCCTTGCAGCAACAATAAGGGCTGCAGAAAAGGTGCCTTTTATCAGACACGACTTTAAAAAGAGTGAGTGGGAGGTAGTTGGTAGAGTATTTGTATACAGTTTTGTTCATCTAAGCTATTTACCCCTGCAGTTGTCTCCAGCGTTTATTATGACATGTTTGTTTGAGGATGAGGCGTTGACAAATGAGTTTCTGTTAGATTCATTTCGTTTTTATGTTTCCTTAGATGACAGAGATATTCTTGCCAATTGCATTGCTGGTAATGTGCATCCTAATGACGATGAACTTATTGATTTTTTGAGTTCCTTTAAATGTTATAGGAATCCAACTGAGCAGAATATAAGGGAAATAATCCTGGAAATAGTGCATCAAGAAATTGTACAAAAACCACGGGTTGTGGCCAATTGTTAG

Transcript

aflo_s0183.g5.t1

CTCAAATCATTCAGGAATAACAGGGAATTTAACCTATGTCACTGATGGTAACATTAGCACTTGCCTGACGGTTCAACGGAAATCTgGgcgattgctttggGtgagaataactttgaacAtgAaatctttcgtgtacaaaatcTGGATAATAAACagtcaaggctgctgttttgcagAacttccaGAgctacagattgttttaacAaacagtgagcaaaccagggaggcaacctgtaaAgtgTatgatTggaagaaaCagcagaagAgattaatgatttgtgaacctaccaTtatggcaacaagcTtaactattTatgccaaaggagcagatAacttaactctttgCgaagtcttggtaacttcggcagATGATAAATTGGTTGCTCATGGTGTCCTCCAAGAAGTTTGGCATAACATCCTTTACTGGAACGTTTACCATTTGCAGTATTACACAAGGTTTCCTGGTGTTCCAGATGAAGTTACAGTTGGTGATCTTAATGATATTAATGACTTTGACACCGATAATTGTTTTTACTCTGGACAACGTCTCACAGCTTATCTGTCGCTTCCAGAAAGTGGAAATCACACTTTCTATGTTGCTTGCAACATTAGTTGCAAATTGAGGCTGGAGGTAAACCCAAATGGCAACCAAATTGAAGACAAAGAGACAGGACTGCTTTTAGCAGAGTTACTGATACAGCAGCCATACAGCAACAGGATCACAAAATCTAAAGAAATTTTTTTAAGTAAGTGTCGCTTGTATCGTGTTGAGATGCTTATGGCGTATAGAGGGAAATACAATGCTTCAATAGGAATAAAGTTACCAAATGGCACCTTTGAAGGACCAATTGGAAAGGACCGATTATTTTGGGTGCGCCCAGgcacctataaatattgttattatgggacttattttcccaattgttcaattgacttgtttctgaagtttgctaaacaaagcattttggtgcagaaggctttaccaatggattgcagagaatacaatttcaatagaagttttaacaccatgttgtggcaggagagaaATTACCAAGTATATGTTTCCTATACCTACGTGGACATAGAGATACAGTTACCAGCTGTTTCTAAAAAAGTTTCTGAAATCTTTATCTCAGgccaaacatgtgatgtcgcagatgtaccaaacttcatttgcccctctggtaaatgtctaaggactgaccttctctgcgactctgataaagattgtgaagatggcacagacgagatgagatgtggcctagggatgggttgttcaaaagacgagttctcctgtgcagatggtggatgtgtttcaagggcactgacttgcaatggagaaaaggattgtgaagatgaaactgatgagccaatgctctgcaaaaaacaagCTGCTTGGGAAATTGAGGACTCTTTTGCTTGTGATACATCATCTAGCACAGCAATCACTGCAACATCGCGAGGGCAAAGTGGACAGATTGCAAGTTTTCCACAAGAAAGAAGAGATTCTGCAGCAGGCCCGTCATTTTGCAGTACTACGCAAGATTCCTCTGAAGATGTAATTGAAGTTCTGAGTCCTGGTGAAGGCTCAGATGGATCCTTGGGCACTGCTGCTGTTTCATCAGATGATCACCACACAGACTTCGAGGCCCAATTTGATGAACTACCCATAAAGCCCATTCTGTTGCACCGGGCCCAGCTAAGACAGGATTTCATTATGAAGTTCAGTGATCCAAACATTTTAAACTTCAAGCTTGATGTTACAATTGTAGATGAAATGGGTAAAGAGGAAATAGGCTCAGGAAATGGTGTCTTAAGAGATGTAATATCAGAATTTTGGAGGTTATTTTTCCTTGCAGCAACAATAAGGGCTGCAGAAAAGGTGCCTTTTATCAGACACGACTTTAAAAAGAGTGAGTGGGAGGTAGTTGGTAGAGTATTTGTATACAGTTTTGTTCATCTAAGCTATTTACCCCTGCAGTTGTCTCCAGCGTTTATTATGACATGTTTGTTTGAGGATGAGGCGTTGACAAATGAGTTTCTGTTAGATTCATTTCGTTTTTATGTTTCCTTAGATGACAGAGATATTCTTGCCAATTGCATTGCTGGTAATGTGCATCCTAATGACGATGAACTTATTGATTTTTTGAGTTCCTTTAAATGTTATAGGAATCCAACTGAGCAGAATATAAGGGAAATAATCCTGGAAATAGTGCATCAAGAAATTGTACAAAAACCACGGGTTGTGGCCAATTGTTAGTTACCCTTTTAAGAGAACTCCGGAAATTGGTTAAAACGAGTGATGATTTAACCAGGTTGTACGAGGAGCGAAAACCAACCCCCAAAAAGGTTGCGAAGCTCTTAGAAGCAAGTCCTGAGAATGATGCAGAAAGGTGTTGTTTGGACCACCTGAAAAGGTATTTAAAGTCTCTTGAGGGGAATATCAGCAATTTTCTTCTATTTGTGACGGAAAGTGACATACTGACTTGCACTTCAATGAAGGTCACATTCAATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00057	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR023415	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036055	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR050685	Family	Low-density lipoprotein receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24270	LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan