Gene detail

Detailed information of aflo_s0186.g24.t1 in Acropora florida

Genomic Location: sc0000186_pilon:495675...498000
NR annotation: XP_044181934.1, serine/arginine-rich splicing factor 5-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0186.g24.t1

GTGAAGATTTCCACTTAAACTTCGTTTTAAATGATCATGAGCGGGCGAATCTACTGCGGGAGGCTTCCTTCCGATGCTACAGAGAAAAATTTGGAAACTCTGTTGAAAGCGATCGGCAAAATCCGCGATATTGACTTTAAAGAGGGATATGCATACGCTGTTTTCAAAGATTCACGCGACGCCGACAAAGCAGTGCAAGAACTTAACGGTAGAGAGTTCATGGGACAAAGTATCCTCGTAGAGCGAGCTAAGGATCTAAGAAATGGGGTCGGAGGATACACTGTTGCAGGAGGGTACACTGCAAGAGTCCGTCAACCGAAGCCACCTCCTGTGCGAACAAATCACAGAATTCGCGTTGAAAATCTTCCCGCCAGGGCCAAATGGTCGGAGCTCAAAGAATTTATGAGTGTAGCGGGAGAAGTGACTTTTGCAGATACGCACAGGCGGAGACCAGGTGAAGGGCTCGTTGAGTTTGCTAGCAAGGAGGGTATGATGAACGCCTTAGAAACTCTTGACAAGCAGGAGTTTCTTGGGAAGAAAATAAAACTTGTTGGGGAAACCCCTCGTTCAAACAAAAATGGCTCTCAATCGCGTTCAAGATCAAGATCTGAATCACCACATAAAAGAAAGAGGAGAGATTCATCTTCACCATCCTTGTCACATACTAAGAGACGGCATTCTCGGTCACATGAAAGGTCAAACACACCTGAGAAAAGCCGCAAGAGACATGCACGTTCTTCATCCCACTCTCGTTTGAGTCATAGAAGATCAAGGTCACATTCTTTGTCCAATCACAGGTCATCGCAATCACGCCGAAAAAGGTCATATTCAAGATCACCAAAGAGGTCGAATCGTAAACCCAGATCGAGATCACGTTCCAAGGATCATTCAGAGAGACATTCCTCTTCAAAATCCAAAAAACACAAGAAAAAGAAGCACAGGTCAAGGTCGCATTCACCATCAAGATCTCCGTAAGAAAAAAACTATTGCGGAATTTTGGTTCGTGGATTAATTCTTCAGTGTACATGTACTGTATCATAAAGGGATAGGCTGAAGTTAATGTAACATACTTTAGAACACTAGTTTTTGTAAAACGAATGCTGTATTTAAAGTTCAGTGCTCTTAGGCTTATTGTAGTCTACTACTCCTCATTCCTTATCATCATTATACAGTCTAGTCTTGATTATCTGGACAGAATTTTGCTTGGTCTCAGTCCAGATAATGGAGTCTCGACTCTAATGAACATCAGCGAACTATGCAAGTGAGATAGTTTAGCACTATTTCTTTGCTCCAACATGATTAAACTGCAAAGCCAAGGAATACCAATTACCAAATAAAGAAATCTTTCTACTTTCTAGTTTCTATCTGTAAATCCAAACAGTATTTGTTTCAGTGTTTGTTATGACCAAGCCTTACTTGTTAATGAAAATCAACAGTTGCTGGCTCAAAGTCTTGCTTAGCATACTCTTTTTTTAACAAAGATTTGCATCAGTTTGTATAAATAATATTGTGGCGTGCATGTATATAGACAGAACTTATCAAGTACTTGCAAACAATCAAACCAACAATATCGCTGATTATTTTACAATTTTGGAATTATTTTGTTTTTCGGATTCACTACACATTTAATTCACAATGTAAGATTGAATCAGCTCTAGGAATTGGCCAGAAAAGGGATACTGTGGGCTAAAAATTATTTTACATTTATTTCTCTTTCAAATGCAATTATTGAATGTTTATACTTACTCCAAGATGATAAGGTATCTTGATTTTAACCTCCTTTCTTGTGTATAGAACTAACTCCTTTAAGATGGGAAAATCTTGTGCAAGCAGTACTGTATTTTAAGTATTAAAAGGGAAGTTTTTCTAGGAGCCAAAATCAGCAGTAGTTTCTTTGCTTTTAGTCCAGCCTGTAGACATTGAATGTTTCACTAGTTTCCTGGATCTCCAGGAGTTATTATCATGCAAATATTGTCTTCATTACTGTACATAGACATGACATGGAAAAAGCTGAATTTTTTTGCTCTCAGCTAAACATATTCCTGTTGTTTTATTACACAAATGCCTGAAACAGAGGACGTGCATGCGATACACAGCCTTTTACTTTAGAGTAATTATTTTGCTAGAAACTATTTTTCTTATTGTTCAGTCAGATCAAACGATTTGTGTACTGTTTATTTGATTCTTGTACTTGCATATGCATCCAAATCTGAGGAAGATATGCAAAACAGAAATCACGGATTTTTCTTGTCACATACCAGATAAAATTTAAGTCCACATGCAGAAGAAATGTTTGTGATCAAATTAATAAATTTATGTCAGGATG

Protein

Uniprot

Uniprot term	Description
Q13247	Serine/arginine-rich splicing factor 6 OS=Homo sapiens OX=9606 GN=SRSF6 PE=1 SV=2
Q3TWW8	Serine/arginine-rich splicing factor 6 OS=Mus musculus OX=10090 GN=Srsf6 PE=1 SV=1
G3V6S8	Serine/arginine-rich splicing factor 6 OS=Rattus norvegicus OX=10116 GN=Srsf6 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050374	Family	RRT5/SRSF/Splicing Factor SR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12893	SRSF4_5_6, SFRS4_5_6; serine/arginine-rich splicing factor 4/5/6	-	Spliceosome	ko03041	deepkoala