Gene detail

Detailed information of aflo_s0212.g28.t3 in Acropora florida

Genomic Location: sc0000212_pilon:748832...786913
NR annotation: XP_029208957.2, spliceosome-associated protein CWC27 homolog [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0212.g28.t3

CGCTGTTTAAAGCCATCCGGTTACGGTCTCTCCCCGAAGCAGAGAGGGTAACAGCAGAGAAGAAAAGTAACTTGAAGTTATGAGTAATATATACATCCAGGAGCCGCCCACGAATGGCAAGGTCCTTTTAACTACAACCAGTGGGGAAATTGACATTGAGTTGTGGTCCAAGGAAGCTCCTAAAGCCTGCAGAAATTTTGTCCAGCTCTGCTTGGAAGGTTATTATGATGGCACCATTTTCCACAGAATTGTCAAAGGATTTTGTGTGCAAGGAGGTGATCCAACAGGCACAGGAATGGGTGGAGAGTCCATTTATGGAAAAACATTTAAGGATGAGTTTCACCAAAGACTTCGCTTTGTGCGAAGGGGATTAGTTGCCATGGCAAATGCTGGTCCAAATGACAACCAGAGTCAGTTCTTTTTCACCCTTGGAGCCACACCTGAGTTAAATGGGAAACACACAATATTTGGAAAGGTGGCGGGAGACACAATCTATAACATGCTCAAGATGGAAGATTGTGAAGTGGGAGAAGATGATCGGCCACTCTTCCCACCCAAAATTAAGAGTACAGAGGTTTTGCATAATCCATTTGATGACATTGTTCCACGGCTAAGAAAAGATGTAAATAACGAAAAATCAGAGGAAAAGAAGAAAAAAGTCAAGGGAACAAAAAACTTCAGTTTATTGTCATTTGGGGAAGAGGCTGAAGAAGAGGAATCAGAGGTGGTATCTGTGAATAAGACAATGAAAATGAAGAGCAGTCACGATGTGTTACAAGATCCAAAGCTGAGCTCCCAGCCTGTAGTTGAAAACACAGCTGAACTTGGTAAATTAAAGGAGCAAAAGAAAAGCAAAGAAGGTGCTTCGGATGAAGATAGTGAGAATGAGATAAGCTCAGATGAAGAAGACTTTGACCCCAGGATGCTTGATCAAGTGCGGAATAAATTAAAGAAGCGAAAAATGGGTAATGAAGAAAAAGATGATCTGGATGAAAAAATGGCCAAAGATCCATCTGCAAAAAGCAAGCAGGAATCGGCACGAACAGAATACAAGCGGCTAAAGAAGGAAATGATGGAGACAAAAAGAAACAGAGATAAGGAAGGCAAAAAGAACTCAGAATCCAAAGGAGAATCAGACGTGTTGGCTGCATTCCACGCAGAACAAGTAACTTATCTCGAAAAGAAGAAAGCGGCGCAAAAAAGAAAAGGCGAAGGACGAGATGAGCAGACCTTAGCTCTCCTGTCCTCTTTTCAATCCAAACTTGAAGAATTCCCTGAGCaagaagaagatgacgaagagggagaagaGGCTGAGGACGACACTGGGTGGATGTTTCATACACTGATGTGCGAAAACGAAGGCAAACGAGCTAGGGATGCTTTCATTGAAGACGAGGATACGGTAGGTTCAGCTATTGCGAAAGCCATGAATTGGGATACAGAAATCGTGGAATGGCTAGCGTACCCTGAAACTCTTCCAGGGACACATGACTCTGAGACCTTAGCTCTCCTGTCCTCTTTTCAAGCCAAACTTGAAGAATTCCCTGAGCAAGAAGAGGATGACGAAGAGGGAGAAGATGCTGAGGACGACACAGGATGGATGTTTCATACACTGATGTGCGAAAACGAAGGCAAACGAGCTAGGGATGCTTTCATTGAAGACGAGGATACGTTTGAAATCTACGATCCACGAAATCCCATTAACAAAAGGCGCAGAGAACTGAGCAAAAAATCCATGCAAAACAAACGGAGATAACAGATCGGCTTCAACATTTGAAGATTTTAAGTAGACTAGAGACATCGATAGAAGGAATATGGTCTTCGGTGAATCGTTGAGGAAACTTGTTGAAGAACTACCATCAATCAGTGAAATTTACGAGCGAAAACTTGTCTTTACATGAGTTGTCGTGACAAACATGATTTGGCAACTTGAAATGACGTCGCTAATGATGATGTGACGATTTTAACGGAACAAAACTTGTATATTTCT

Protein

Uniprot

Uniprot term	Description
Q7ZW86	Spliceosome-associated protein CWC27 homolog OS=Danio rerio OX=7955 GN=cwc27 PE=2 SV=1
Q4R713	Spliceosome-associated protein CWC27 homolog OS=Macaca fascicularis OX=9541 GN=CWC27 PE=2 SV=1
Q6UX04	Spliceosome-associated protein CWC27 homolog OS=Homo sapiens OX=9606 GN=CWC27 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00160	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044666	Family	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-like	Interproscan
IPR029000	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan
IPR002130	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45625	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0000413	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12737	SDCCAG10; peptidyl-prolyl cis-trans isomerase SDCCAG10	EC:5.2.1.8	Chaperones and folding catalysts	ko03110	deepkoala