Gene detail

Detailed information of aflo_s0224.g8.t1 in Acropora florida

Genomic Location: sc0000224_pilon:44437...55015
NR annotation: XP_044175159.1, pachytene checkpoint protein 2 homolog [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0224.g8.t1

CGCAAAAATTTGAACATCTTTGCGGAATTTTTATAATCAAATCCTTTCCATTGCTTTTTATAGATGTTTTACCAATTCGAAAGATAACATTATACGACAAGGGTGAACTCATTGCCGAAATGGAACAAGTTCATGATCTTTCCGAAGCCCTCCCTTCACAGGCTTCGCAGACTTACCACATCGAAGTTCTTCAAGATCCTTACAGCACCGCTACGTCTGGCATAATTAAAGAGCACGTGAGAAAGTTCCTATTGCACGAGGCCACTGTGTTTGGTGATACAACCTTTTCGGAATTCAGTGACATCTTTTTGACACAGCATGTGAAATCAGTGTCAGTCTGTGACACAGAGATGGTGACTAATGACAGACAGGGTAGCCTAAAGAACTGCAAGTTGGCAATCCATGTTTTCCAGCTCCATGATGATGGTCCAGCGACTGAAGAGCTTGAAGAGGACATTGCAGCTGCTAATCACTGGCTTTTACCTTCTGAGGATTTTCATGGAGTTTGGGACAGTTTAATATTTGATTCAGATGTCAAAGCCCAGCTTATTAACTATGCCACCACCACTCTGCTGTTCTCAGACAGGGGTGTTAACGGTAATGTTATATCATGGAACAGAGTTGTCTTACTTCATGGTCCACCTGGAACTGGAAAAACATCACTTTGCAAAGCCCTCGCTCAGAAGTTGAGCATCAGGTTATCAGATCGATATTCTTATGGTCAGCTCATTGAAATAAACAGCCACAGCTTATTCTCCAAATGGTTCTCTGAGAGTGGAAAtcgttcgaaaaccgctctgttGAAAGAGGTGTGCATCTAATGATGTGCAATCCTGAACGTTAGACAAGGACTTCAGTCGCCATCGTCCTTTAGCATTCATATTCTGTACTCTCTTTTTCTTAACAGGGACTTAGAAGTCTTACGTTTTATCAACAATGACGCTACCAATCTCAGTTTACAGCTTTTAGAGATAGCGAGGAAAAGTCATGGTTTGAGCGGAAGAACGCTCAGGAAGATCCCATTTTTAGCGCATGCGGGGCACATCCAGACACAATCCGTGACATTACCGGTGTTTTTGAGTGCGCTCTCAAGGACGGTTGATAAGCAGTTCGAAGACCGAGAAAACCTCAAGAACGATGACTAAAAAAAGAAGACAAACGATAACTGATCAACCAGGCTTTATTTGTTAGAAGGTTGGACAATGTAATTCACCGGAAAAACCTGTACCAGGCTTGTAGAtagctgaatagagcggttttcaaatgactgtcgaaagaccaaaagcaaagtaattactccgaccaatcacaacaggagcagacagcgcgatgagccaatcagaatccatggcaattacctgtaactcgctcgaagcgcaggaaaaatcgcgcgtgcatggtgcgattggttttggttttgcttctcattggttgaaaaattggcgcgagacctttaagccaatcactaagcgtagcaatcgcaatcacgtaattactttcgacagtcattttgaaaactgctctatAGTTTAggcaatgaaaacgccagaaaacaatgatatgattggttgaatgaggaaaaataatcgtgctgcacgtgcagtatgcacgtaagtatattctttcgtgaaatttctaaatttagggttttaacgacaacacacaacaatgaatctttcatttgctctgtttacttcaacggcgttgcaaccagttcatttgtggcattctctgtcactgaacaatatagaacgagatcaagaagcgataatGCATGGTTCAATTTTTACCTGTTACCATCTCCCCCGGGAAACGTCTACTCCTTCAGGCCCGGGGTTGGGGAATTACTTCAAACTGTCTTGTCCCCGGGTGCAGGAGGGGGGGCAATCGAAACTGTCTAACTATCTACTCGTCGTCCTTGAGAAGCACGTCACTTCTCGGACCGCGTGGAGAAGTACTTACAGAGAAAATGCCCAGAATTTGTTGCAGACTGTTTAGAATTAAATAACCTTTCAAGAAAGAAAAAAATGGCAAATCCACGGGGGTATGCCCGGAGGGGATGATAGCAGGGAGCCTGGCGTGGCCGTCGTTACTGCTAAAACTCCTTAATTTGTTTTAATAGCGTTCGTTCGTTGGCCAGATGTTTTATTCCGTATTACGTTCCTTCCCTGTCCATTCCCTGGGTCAAATGCCTTTTGGTTAAAaaaaaaaaaaagaaaagaaaagaaaaGCTATTTTTGTTTTGTTTTTCAAATATCTGCATCGTAGTTTTTGTAGTGTATTTTGACAAAACTAACACCTAAAAATCAACACCCATGGAAATGGCATGCTCGATTTCCAATTACAATCTGAATAACGAATTTCGTGCTAATATCATTCATTAAAGGCAATCTTGGCGTTGCGTTCATTGTACAGTATAGGTCATTGCAATAAATAATGATTTTATTT

Protein

Uniprot

Uniprot term	Description
Q15645	Pachytene checkpoint protein 2 homolog OS=Homo sapiens OX=9606 GN=TRIP13 PE=1 SV=2
D3K5L7	Pachytene checkpoint protein 2 homolog OS=Sus scrofa OX=9823 GN=TRIP13 PE=2 SV=1
Q6P4W8	Pachytene checkpoint protein 2 homolog OS=Xenopus tropicalis OX=8364 GN=trip13 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044539	Family	Pachytene checkpoint protein 2-like	Interproscan
IPR003959	Domain	ATPase, AAA-type, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45991	PACHYTENE CHECKPOINT PROTEIN 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005694	Cellular Component	chromosome	Interproscan
GO:0007131	Biological Process	reciprocal meiotic recombination	Interproscan
GO:0051598	Biological Process	meiotic recombination checkpoint signaling	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan