Detailed information of aflo_s0235.g21.t2 in Acropora florida

Genomic Location: sc0000235_pilon:205116...233570
NR annotation: XP_029202172.2, harmonin-like isoform X1 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q80VW5Whirlin OS=Mus musculus OX=10090 GN=Whrn PE=1 SV=3
Q810W9Whirlin OS=Rattus norvegicus OX=10116 GN=Whrn PE=1 SV=1
Q9P202Whirlin OS=Homo sapiens OX=9606 GN=WHRN PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00595PDZPDZ domainDomainInterproscan
PF09588YqaJYqaJ-like viral recombinase domainDomainInterproscan
PF21219USH1C_NHarmonin, N-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011604Homologous_superfamilyPD-(D/E)XK endonuclease-like domain superfamilyInterproscan
IPR036034Homologous_superfamilyPDZ superfamilyInterproscan
IPR011335Homologous_superfamilyRestriction endonuclease type II-likeInterproscan
IPR001478DomainPDZ domainInterproscan
IPR019080DomainYqaJ viral recombinaseInterproscan
IPR007527DomainZinc finger, SWIM-typeInterproscan
IPR030237DomainHarmonin, N-terminalInterproscan
IPR051844FamilySensory Perception USH2 Complex ProteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23116PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan

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