Gene detail

Detailed information of aflo_s0248.g10.t1 in Acropora florida

Genomic Location: sc0000248_pilon:172746...182836
NR annotation: XP_029188387.2, protein SGT1 homolog A-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0248.g10.t1

AGAAACTTCAGTGTAGTAAAACGCCAGGCTACACAGCACAATGGCGAGTGAACTGATAAGAGAGGGCAACGAAGCCTTCGTAGATGATAACTATGATCTCGCTGTCAAGAAATACACGGAGGCCATACAGCTCAGTGGATCTGATGCTGAATTCTTCTTAAAACGGGCAGCAGCATATATGAAGCTGGGACAGTTTGAACAGGCAGCTGCAGATGGGTCCGCGGCTGTCAACTTACAGCCAAAAAACAGCAAAGCCCATGCAAGAAAAGGAATAGCTCTCTTTAATCTTGAGGATTACGAAGCCGCTAAACAGTCCTTTGCAGATGCTTTACAACTTGACAAAGACAACAAGGAATTACAGACATGGATTGGAAAATGCAAGGATCAACTGGGTTCCAATGTTGAAAATTGTGGAGCAGGTGTTGCAGAGAAGGTAGAAGACGTTCCACAAAAGTTTAGCATCAAAGCCAGTGAAGAAGCCTTGCAACCTGCGGCGACAGTGCAAAGTTCCAACCCTCCCACCTGTGTTGCAGAACCTACAACTTCAGCTGATTCCTCCATGTCAGTTCCTGCAGATTCAGAGATGCAGCCTCTTCATGAACAACCACAGGCTCCTGCAGCACCTCCTAAACCACGGTTTGATTGGTACCAGACAGAAACTCATGTGGTTGTAACATTAATGATCAAGAAGTCAAAAAAGGAAAATGTAAATGTGGACTATGGAGAAAAAACTTTAAGTGTGACTGTGAAGCTTCCAAGTGGCAGCGAGTTTATTGAGCTGAAAATGAAAAAGGCTGAAGCTATCAGATGGTCTTCTCTTGAGGCTGAAGATGAAATTCAACCAAAACCACCTACAAAAAATGACAAATCAAGTGATTTACCAGATGTGCACAAATACCCATCATCAAGACATGTTGGCAAAGACTGGGATAAAGTTGCAGCTGAGATTGCAAAGGAGGAAAAAGACGAGAAACTGGAAGGGGATGCGGCGTTAAACCAGTTATTCCAGCAGATTTATGGAGATGGCAGTGAGGAAGTTCGTAAGGCCATGAATAAGTCATTTGTGGAGTCAGGTGGAACTGTATTAAGCACAAATTGGGATGAGGTTAGACGAGGACATGTTGATTGTAAACCACCTGATGGAATGGAATGGAAAACTTGGGATAAATGAGGAAAGACATGAAAGTTGAATGGAGTTTGAGTGCACACGCATGAGACAATGTTTTATTGCTTATATAGTGATGCTGCATAGCAGATTTCAGATTTCACGATACATATTTGTAACTCAAGACAGCATCAGGATCAGTTACAAGTAACCAAACGAAAATTTCAATGTGGATGTGTTCATGACATTGTGTTGCTTTTGGTTTAAATAGAACTTGAGACATTTTGTGCTTAATTAATGTCATAGGTTAAGTAGATTGTTTCCACTTAATGAGGCTTCACCATGTGAACCAAATTGTGACAAAAAAACATCCAATTTATTCACATAAATTCTTGACAATTTTTTTGGGTTAGCATTTATGGCTCAATGACCTCCAGGGTACAGTAAGTTTTGCCATGTTGTCTGCAACAGCTCAGCAGAAAGTAATACATTGTCAGTTAATGATGGACAGTGCTTTTGCTACTGGAGAGTTCACTTCAATACAGATGATTTTCATTGTACTAGCTGTCATGGGTGACAAGTTACTCCTTCATTCTGGTGTGAACTTTTAAGGTTAATTGATAATTTCATGACTGAAATAATGAGGAGGCTATGGCAACGTGATCTACATTCAAACTTCTTTGAAGCAACCCTCTATCCAATGGAATGTCGTCAAATTCCCTTTATTTCCTGTAAATTTGACCTCTATTAACCATAAATTTATATGTATACAATCACCATTGAGAATTCCCAATTGGCTAATTTTATTGCATTTCACCTATATTAAACGGTCAATTGCAATGTGATATTTTGACAACCAAGACAATATGTGAACAATGCCCAGattctgattccaccaacacgagcattcaaagaaaaatagtttaacaagtgtacagtcagccagctgatggatacacgcaattgaataatagtaatacgttacattaaatgttatgatacaactgcagtaaaaaCTTTAATAGTGTACCATGCTAGATATGAAAAAGCACCCAAAAAAGGTGGAAACGTATTCCCCATCTAAAGCAGTGATACGAAACCTTGGGGAAGAGGTACCCCACCATAATAAAACAAAAAAGAAAACTGAAGTCACCAGCAAGACTGATTGATGTAGAATGGCAAAACTGGCCTGTGAAAAGCTAAAAGTAATAGCCTCTGAGATCACATGACAGAATCCGAACCTCTCTATTGTGCCATCAGAATCTCTGACTAATTTGCTCCCGGGTAACTCAATCTTCAGAAATTACATTTTTCTTTTAACAGCTCATCAAAGATAACATGACCTACCTGTAATAAATAAAAAATCCCTACAAGATTCTACAAGCTATTTAAAACAGAAATAACCAACAAAAGACCAATATCTGATCAAAATCAAAATTAATAATAATTATTAGTCTCCCATTATTTGGGAGTTTAAttaagcagcaacgacggcaatggcaaccaaaatgtcacttgaaaataaacatttgggaaatgg

Protein

Uniprot

Uniprot term	Description
Q2KIK0	Protein SGT1 homolog OS=Bos taurus OX=9913 GN=SUGT1 PE=2 SV=1
Q9CX34	Protein SGT1 homolog OS=Mus musculus OX=10090 GN=Sugt1 PE=1 SV=3
B0BN85	Protein SGT1 homolog OS=Rattus norvegicus OX=10116 GN=Sugt1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04969	CS	CS domain	Domain	Interproscan
PF05002	SGS	SGS domain	Domain	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008978	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR007052	Domain	CS domain	Interproscan
IPR044563	Family	Protein Sgt1-like	Interproscan
IPR007699	Domain	SGS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45862	PROTEIN SGT1 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0051087	Molecular Function	protein-folding chaperone binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12795	SUGT1, SGT1; suppressor of G2 allele of SKP1	-	Plant-pathogen interaction	ko04626	deepkoala