Gene detail

Detailed information of aflo_s0252.g24.t1 in Acropora florida

Genomic Location: sc0000252_pilon:334043...341365
NR annotation: CAB3978707.1, Hypothetical predicted protein [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0252.g24.t1

GTCTAAAAGAGCACCCAATTCCATAAGTGTTATCATTACTTGTATGATTCATTCCATGAACGATGGCCGAAACGAAAGCGTACAACGAAGTCTTTAACTATCTCCGCGATAACGAATATCCGATCGATTTTTTGAAAGATCAAAAAAGAAACTTGCGTAAGAAAGCGCTAAAATTCGTTCTTGAAAATGGTGCGCTGTTTTTCATTGGCCAAAGAAAAGGTGAGCCTAAAAGATGGGTTCATTGCCAAGAGGAGCAGCAGAAGATAATGAAAGCTTGTCACTCTGACAAACTTGCTGGGCACTTTGGCCGTGACAAGACGAGAGAAAAGGTTACATCTCGTTATTATTGGGCTAGAGTGTTGGAAGACTGCGATGAAACTGTTAAGCGTTGTGATGTTTGCCAGCGTACCTCAAAGAAATTCGAAAAGCCTTCTGCCCAGCTACACCCGATTAAAGTAAAGGACACTGTGTGGCATCGGATTGGTATCGATCTGGTAGGACCTCTGCCCGAGACGTCCCGCGGCAATAAGTACTTGATCACCTGTACCTGCTATTTCAGCAAGTGGCCAGAGGCAGCTCCTCTCAAAAGCAAATCGGCTGAAGATGGTTATGAAGCTAATTTGATTGAGGGGCGAAGCAGCCAGCCAGAAAATTCTGGTAACACCTTCATCCAAATACGTGTGGAGGACCCATCTGGGAGTTACCAGGAGCATGGTGCAGATGtctccaagcctttgaaagatcttcttaacgacccttctgattacctgaatgagatctgcatatgtttggatatgcctattaaaggactcggtgattacaaaaaagtcgctaaatactacaagttcgacatttacacaatatatcgctttgaagaatcgccagggggtccttccgaagctttgattttagcaattacagctaaatacccagaagttacagttaagatgtttgctggagcggtcgcagagcaaacaaatcgacaggatgttgtcgacttgctgatggacttcgatcgcaaatgatagaatatatctgtgaatttcactcactattaaatgttgtgttcgtcttcactaagacgcaagaaagtttgttaattttGTTGAAGCCTATTTTATACCattttaaactatattttcataatagctttattgcatgcgaagtagtttaatgcacgatgctgaagaacctagaaggagactgaaacgtgtaaagcaaattaactgtcgcaaactgtcccacgagttaatgcgttaggcgaatgccgaatttccaccgatgttgtttgaaacagaggaccatcttggaggctctttctcataaagttgtattacagtccatgttagtcatcttcacgtacttatctgtagtgttttcccgcggttagctgcgtgggttagtgtaaaggactgcggaaacgtcggttcctattgccgtttacctttatctgacaatttaattaactcgattttagttaggtgctacgcgcattgaccaatcatatctcagcgagtacatacataaaacgccagttttaagaaagctagagagtagttggctgccagcgacggaatagagagagttggctgccggctacggcagagtgctgaagttcaacgcctaaataaagaagtaaaacgctgaagctgtggttacaaaatctgtcccgtaACATTTTTATTGTATTTACTAGCTAGTCATACACTTGATTTTTATATTTTTTAAAGCAGGTTATGTTGGTAAATTTTTTTCTTACAGCCAATTTTATATTCTTGGCATgtagtagtagtagtactagtagtagtttatagtaTAATTTGCCGTAACGGTTATTGTGATATCATATCTAGAAAACTTTAACTGAAATATAACAACTTGTTAATGTTGGGAGTCTTGTCAGCCATGGCAATTTAGGCATGGCAACTTAGGCACGGCAAGCTACAATATACTTCCCATAATTTCGATAACTGAGTAGTAAACTAGTATTTCTCCGGTTTTTAATTGTTGTACTTAGAGACCTTTGTTATTGTACTGCATGTAAAGTATTTCTATAACAAAGGGTGCGGCCCAATTAAAGATTTGAGAGTTGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18420	TARBP2; RISC-loading complex subunit TARBP2	-	Chromosome and associated proteins	ko03036	deepkoala