Gene detail

Detailed information of aflo_s0253.g23.t1 in Acropora florida

Genomic Location: sc0000253_pilon:380136...382700
NR annotation: XP_029188086.2, uncharacterized protein LOC114955422 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

aflo_s0253.g23.t1

ATGGGCTGTGGTGGTGGAAAGCACTTAATTTCTGAGCCGCATCGACCAACGATACAACTGACAGGTCACCGCCAACTCGTTGGACACATTGTGACAGTGAGCGGTGACGATCTAGAGACAGAGTCACTTCTTGATTCTGAAATGGACATTTCATGTTCAGGGACCGTTCAAAAATACATTCAAGAACATCCAGAATTCACAAGAGAATTTAAGGCTGTGTTCCACAACGTCGAGAAATTACAACGTTTATCGCGAGAAGAACATGCATTTAGTGACAAACTGGAACTCACGAAGATTAACAAAGAAGTTTTGAAACTTAGGAAGAAGAGCATGAAAGCTGCTTTCTCACCCGGAACGCCTGATGAACAGAAATACAAGTTAATTGCAGATTTCATGATAGATATTGATTCTGCATTGTTGCTCTTTTGTCTTGCTGAAAATCTGTTTAGCTCTTATCTGAACTGTGGCATGGAGCAACGAAGCCAGGGAGTTGAGCCAGGAAAACGATTGATCGCTGAAACAGATAGCTTGGATCACCTGGCTTCTGAATGTCTTATATTGATATTACTCGTAATACAAAACTTTGCAGAGTTTCATGAACCGTTTTGCGAAGTATGCACCAGCAAAACTGGAGTTGTGTCGCTTTGCTTGTTGAAAAGTAAACAGGTTGAAGATGTATTTAAGTCAGTTAATAGTGATGGCAGTAATCGGCCCGTAAGAGCCATCCGTATTCTTGGATGTTGTTTCAACATTTTGTATAATCTGGCGAGAAAAACAGAGTTGGTCAAAACAAAAGTAGACTATGAGGGAAAAGAAACCTTGGTTTATTTTGCAAAATCAGATATCGCCATTGTATCTCCTCTGGCACTCCTGAGTTTGGCTTTCGTTGTTAATGAGGAGAGTAACCATCTCGTTCTGGCAGCAGAGGAAATCTTGGGCGCCTTGACATCAATTTTGCAAAAGGCTTGTGAGTCGGAAAGAAGGAAATTTGATGGATTTTCTGCAAAAGAGCTGGCCGAAGGCCTTGGTCGGCTTGCTGTGAACGATTTTAACAAGAAAGTTTTGGGTGAAAAGGGCGCTATATCTGTCCTTGTTGCATTGATCAAGACATCAAAAGATGACAGAGAGAAGGCAACTGCTGCAAGAGCACTTTGGATGCTCGCTTTTGACGAAAGCAACAAGAAACTCATAGAGCAAGAGAATGGAGCACTAGCTATTCTCAATGAATTGCAGAGAAGCAAGGACCCGAATGTTCAAAAAGCTGCTGCAGGTGCATTATGGGAGATAGGAGACAAAACAACCAGAGCCAACGAGAATGAAGCCTCTGGGAATCACGTGATGATCAGCTATCAATGGGAAAACCAGAAAGTGTTGATTGAAGTGAAAAATAAGCTACAAGCTTTGGGTTATAGAGTATGGATGGACTTGGAGCAAATGGGAGGTTCTACGCTAGAGGCAATGGCTAAAGCTGTCGAGAATGCGTCCGTTGTTTTGATCTGTGTGTCGCAGAAATACAAACAAAGTCCAAACTGCAGATCAGAAGCGGAATACGCGTATCAGTTGAGGAAGGACATTATACCGCTGATGATGCAACGGGACTACACGCCCGACGGCTGGTTGGGGATCATTTTGGGGACAAGACTTTGGATAGACTTCAGAAACGATTACAAACTAAGCACCTCTGCAGAGAAATTATTGAAAGAGCTGGGTGGCAGAGGATTGGAGAATCAGGCAAAAGGAGGTCGCGTTAATGAACACGAGGAAAATTGCGGCAGATTGGTTCAAGCGGATACATCTGAAGAGGTTAGAATAGTGGACTGGACGGCTAGTGAGGTGGACAACTGGTTGAAGGATATTGGGTTAAACGAAATATGCAAAGCAGTGCTTCCCAAAATGGACGGACAAACACTGATTAATCTCCATGCTCTTCGCAGCGAGTGCCCAGATTACTTCTATAAATGTTTAGAAACTAACCTTAACTTGCGTGACATGTTTGACTTGTTTAAATTTAGAGAAGAACTCAGTAAATTAATGTTGAGGTGA

Transcript

aflo_s0253.g23.t1

GGTAATCGACAAAATCAAACTGGTACGTAATCAATCCGAATTTCTTCGGCAAAGGAAGAGCGAGTTAACTCTTCAGTGGGGAAAGATGTTCGTTCAAACAATGTAGAAGATATCTAGCAGCGATCAAAGCTGTTCGGTTAAGTAATTTTATTAAATAACTCAGTGAAACTCTTTCACCGGTCAAGATCCATGGGCTGTGGTGGTGGAAAGCACTTAATTTCTGAGCCGCATCGACCAACGATACAACTGACAGGTCACCGCCAACTCGTTGGACACATTGTGACAGTGAGCGGTGACGATCTAGAGACAGAGTCACTTCTTGATTCTGAAATGGACATTTCATGTTCAGGGACCGTTCAAAAATACATTCAAGAACATCCAGAATTCACAAGAGAATTTAAGGCTGTGTTCCACAACGTCGAGAAATTACAACGTTTATCGCGAGAAGAACATGCATTTAGTGACAAACTGGAACTCACGAAGATTAACAAAGAAGTTTTGAAACTTAGGAAGAAGAGCATGAAAGCTGCTTTCTCACCCGGAACGCCTGATGAACAGAAATACAAGTTAATTGCAGATTTCATGATAGATATTGATTCTGCATTGTTGCTCTTTTGTCTTGCTGAAAATCTGTTTAGCTCTTATCTGAACTGTGGCATGGAGCAACGAAGCCAGGGAGTTGAGCCAGGAAAACGATTGATCGCTGAAACAGATAGCTTGGATCACCTGGCTTCTGAATGTCTTATATTGATATTACTCGTAATACAAAACTTTGCAGAGTTTCATGAACCGTTTTGCGAAGTATGCACCAGCAAAACTGGAGTTGTGTCGCTTTGCTTGTTGAAAAGTAAACAGGTTGAAGATGTATTTAAGTCAGTTAATAGTGATGGCAGTAATCGGCCCGTAAGAGCCATCCGTATTCTTGGATGTTGTTTCAACATTTTGTATAATCTGGCGAGAAAAACAGAGTTGGTCAAAACAAAAGTAGACTATGAGGGAAAAGAAACCTTGGTTTATTTTGCAAAATCAGATATCGCCATTGTATCTCCTCTGGCACTCCTGAGTTTGGCTTTCGTTGTTAATGAGGAGAGTAACCATCTCGTTCTGGCAGCAGAGGAAATCTTGGGCGCCTTGACATCAATTTTGCAAAAGGCTTGTGAGTCGGAAAGAAGGAAATTTGATGGATTTTCTGCAAAAGAGCTGGCCGAAGGCCTTGGTCGGCTTGCTGTGAACGATTTTAACAAGAAAGTTTTGGGTGAAAAGGGCGCTATATCTGTCCTTGTTGCATTGATCAAGACATCAAAAGATGACAGAGAGAAGGCAACTGCTGCAAGAGCACTTTGGATGCTCGCTTTTGACGAAAGCAACAAGAAACTCATAGAGCAAGAGAATGGAGCACTAGCTATTCTCAATGAATTGCAGAGAAGCAAGGACCCGAATGTTCAAAAAGCTGCTGCAGGTGCATTATGGGAGATAGGAGACAAAACAACCAGAGCCAACGAGAATGAAGCCTCTGGGAATCACGTGATGATCAGCTATCAATGGGAAAACCAGAAAGTGTTGATTGAAGTGAAAAATAAGCTACAAGCTTTGGGTTATAGAGTATGGATGGACTTGGAGCAAATGGGAGGTTCTACGCTAGAGGCAATGGCTAAAGCTGTCGAGAATGCGTCCGTTGTTTTGATCTGTGTGTCGCAGAAATACAAACAAAGTCCAAACTGCAGATCAGAAGCGGAATACGCGTATCAGTTGAGGAAGGACATTATACCGCTGATGATGCAACGGGACTACACGCCCGACGGCTGGTTGGGGATCATTTTGGGGACAAGACTTTGGATAGACTTCAGAAACGATTACAAACTAAGCACCTCTGCAGAGAAATTATTGAAAGAGCTGGGTGGCAGAGGATTGGAGAATCAGGCAAAAGGAGGTCGCGTTAATGAACACGAGGAAAATTGCGGCAGATTGGTTCAAGCGGATACATCTGAAGAGGTTAGAATAGTGGACTGGACGGCTAGTGAGGTGGACAACTGGTTGAAGGATATTGGGTTAAACGAAATATGCAAAGCAGTGCTTCCCAAAATGGACGGACAAACACTGATTAATCTCCATGCTCTTCGCAGCGAGTGCCCAGATTACTTCTATAAATGTTTAGAAACTAACCTTAACTTGCGTGACATGTTTGACTTGTTTAAATTTAGAGAAGAACTCAGTAAATTAATGTTGAGGTGAAGGGAATATTACTTGTCGTGGACAATCATTTCTGGTCCGCAGATTTAGATGCAACTACAACTTGCACCATTATTAtttgtcgatacttttaaaaactgaggtcttacagcaaagtcacaccaagatggacgccgttaatttcttggcttcaaaaatgaaacaataTGAATAGATTTGAAATTTACAAAGAAAAGttgaaattgagagaaaaaaaaaagtaaaatgtgagcgtcatatcttgacgtcttccacgggacttcaaccttggtctttactcgcctgttgttgcacagagtacaaaaacaaccttcaaaataaaaatttaacaaaagc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035897	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000225	Repeat	Armadillo	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR000157	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46270	ARMADILLO-TYPE FOLD-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan