Gene detail

Detailed information of aflo_s0269.g26.t1 in Acropora florida

Genomic Location: sc0000269_pilon:314116...331707
NR annotation: XP_029200522.2, probable ATP-dependent RNA helicase DDX27 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0269.g26.t1

CAAATCCATCATGGCGGCTCTTCCTTTCGTGGGAACTCTAGACTCTGATGAAGAAGTTCAACAAGTGGACGATGAAACGGAGAGTGAGGATGAGCAAACAAAGCCCGTGAAGAAAGCAAAGAAAAAGAAGAAGGCTAAATCAGATGTATTCCAAGATGGCTTTAATTTATTTTCTGGAGAGACGGAAGATGGTTATAAAGATCCCTGGAATTTCGATGCTGCTATTAACTTATTAAAGAAAAAGCAGATATCGACATTTCAAACAAGCCTTCAGGACAAAATATCAAAGAGGAGAGATGACAAAAGAAAGAGGAATAACGCTAAAGCAACTgaagaagaagaagaagaagaacaggaagacaggaagatgaacaacttgaaacagagaaagaaATTGAAAGCGGAGAGAATGGTGTCAACCACGCCCTTAATAATAATGATGAAGATAATGAAAGCAATGAAGGTGAGGATATTGGCAGTGAAGAAAGCAGCTCAGAAGATGATGAAAAAGCAGACAAGGTCACAGAGAAGAAAAAGAAATTTTTTCAAGAACCACCACCCCAAGTAATGCATGAAAATTTCTCAACAATGAATTTGTCAAGACCTTTACTCAAGGCAATAAATGATTTAAGTTTCATTCATCCCACACCCATTCAAGCATCCACAATCCCTTTGGCTCTGTTGGGCAAAGACATCTGCGCCTGTGCGGCAACTGGCACAGGAAAGACAGCTGCATACATGCTTCCAATATTGGAACGACTCATTTACCGACCTCAGAACACTGCTGTGACTAGAGTCCTGGTTCTTGCTCCAACAAGAGAGCTTGCCATTCAAGTTCATTCAGTTAGCCAAGCGCTTGCTAAACACACAAACATTCAAATTTGTCTGGCAACTGGCGGCTTAGATAGCAAGAATCAGGTGGCGCTCTTGCGTAGGGGACCAGATATTGTAATTGCTACCCCTGGAAGGCTTGTAGATCATCTGCACAATGCTCCGACATTCAGTCTACACACTGTGGAAATTATTGTTCTCGATGAGGCTGATAGAATGCTGGACGAGAATTTCCAAGATCAGATGGAAGAAATTATTAAACTGAGTCCAGGAGGAAGACAGACTATGCTCTTCTCGGCAACCATGACAGATGAGGTTGAGGAGCTTGCGAATCTGTCGTTAAACCAGCCGGTGCGATTGTTTGTTGATAATAACACTGACGTAGCTTACAATTTACGACAAGAGTTCGTAAGAATAAGAAACAACAGAGAAAATGACCGATTGGCAATTGTGACAGCTCTGTGCAGTCGGAACTTCGATGAACATTGTCTTATATTCATGCAAACCAAGCACTCAGCGCACAGATTGCGAATCATTTTAGGTCTGCTGGGTTTGAATGTGGAAGAACTACATGGCAACCTAACTCAACTTCAGCGTCTAGAGGCTCTTAGGAAATTCAAGGAAGGCCAAGTTGACATCCTTGTTGCAACAGACCTAGCGTCCCGAGGATTGGATATCCTTGGTGTAAAAACGCTGAGAGTTTCAGAAATACAGATGAACAAGGCTCGCAATCTAATTGAACACGAGAAAGAGATATTCTCCAGACCTCCTCGGGTGTGGATTCAAAGCAAACGTGATACAAAGAGGAAAGCTGAAAACGCAAACGAGCCTGCTAAAAAGAAATCCAAAAACGGAGATTCCAAGGGAAACAAAACTGGAGCGAGAAATGAAAATGAAGAGGAAAAGAAAGTACGAAAAGAGATGCAATTTTTGACGCGGGAAGCAAAGAGATCTCGCAAACATAAGAAGTTGCGTGCTTTTCCAGAAGACAAACCCAACAGCAAAGGAAAAGGAAAATCTTCCAAAAGTGCTGGCGTTGTGTCGCGGTTTAAGGCTTTCGACAAAGAACTGACAGATACCAGTAAAAATGCGCTGAAATCATTTCGACAGAGTTCGAGGGAAAATGATTTCAGAAGCGCGAAGAAAGGATCCAGTGGATTCAAGTCTAAGAAAAGGTACAAGAGGAGATGACTTCAACGCATTGATTGGACACAACTGGAGATGTAAGCTTTGCGATTATGAACACGAATTGTTGGGTTGGTACATGCTGAGAAGAAAAACGAAATTGAAAAATTTCGAGATCATTGCGTACAGTCCTTTGTCACGGAAAAGCAGTGAATCCAATGGTTTCTTTGGAAACTTGAATCATCTTAGTTATATTTCCCTGCATTTTTATGAACGAGGGTTTATCAACACACTTCATGTGACACAAGAAATTAAAATGATTTCAAAGAA

Protein

Uniprot

Uniprot term	Description
Q921N6	Probable ATP-dependent RNA helicase DDX27 OS=Mus musculus OX=10090 GN=Ddx27 PE=1 SV=3
Q96GQ7	Probable ATP-dependent RNA helicase DDX27 OS=Homo sapiens OX=9606 GN=DDX27 PE=1 SV=3
A1A4H6	Probable ATP-dependent RNA helicase DDX27 OS=Bos taurus OX=9913 GN=DDX27 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan