Detailed information of aflo_s0299.g5.t1 in Acropora florida

Genomic Location: sc0000299_pilon:72117...96555
NR annotation: XP_015780252.1, PREDICTED: probable ATP-dependent RNA helicase DDX4 isoform X2 [Acropora digitifera]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q61496ATP-dependent RNA helicase DDX4 OS=Mus musculus OX=10090 GN=Ddx4 PE=1 SV=2
Q5W5U4Probable ATP-dependent RNA helicase DDX4 OS=Bos taurus OX=9913 GN=DDX4 PE=2 SV=1
Q4R5S7Probable ATP-dependent RNA helicase DDX4 OS=Macaca fascicularis OX=9541 GN=DDX4 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00076RRM_1RNA recognition motifDomainInterproscan
PF00098zf-CCHCZinc knuckleDomainInterproscan
PF00271Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF00270DEADDEAD/DEAH box helicaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000629Conserved_siteATP-dependent RNA helicase DEAD-box, conserved siteInterproscan
IPR036875Homologous_superfamilyZinc finger, CCHC-type superfamilyInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR000504DomainRNA recognition motif domainInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001878DomainZinc finger, CCHC-typeInterproscan
IPR001650DomainHelicase, C-terminal domain-likeInterproscan
IPR014001DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR011545DomainDEAD/DEAH box helicase domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47958ATP-DEPENDENT RNA HELICASE DBP3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0003724Molecular FunctionRNA helicase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0007276Biological Processgamete generationInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0043186Cellular ComponentP granuleInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13982DDX4, VASA; probable ATP-dependent RNA helicase DDX4EC:5.6.2.7
Chromosome and associated proteinsko03036deepkoala

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