Gene detail

Detailed information of aflo_s0421.g17.t1 in Acropora florida

Genomic Location: sc0000421_pilon:256022...273795
NR annotation: XP_029211499.2, CCR4-NOT transcription complex subunit 10-like isoform X2 [Acropora millepora]
Species abbreviation AFLOR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

aflo_s0421.g17.t1

ATGTCAGACAATCCAGTTGATAATAGTGATGGACCTGCAGAAGCCATTCCTAGAGTTGGTGTTACTGATGCCCAACGTGAACTTGCTAGCAATGCCCATATTGAATTTGAAAGTAAACATTATGATAGGTGTTTGTTATCTCTGAACAAACTCTCAGAACTGAGGAAGAGTGATAAAAAAGTGCAACATAACAGGATAGTTGCACAATTCTACATGGTAAACTGCACTGGAAGTGACGAATCTGCAAAGAATTTTATGAAGATAAGAAAACAGATCGAGAAAGAGAGTGGCGAAACTGGTGATGATTTGGATGACATTGACATGGCTCATCTTTTGTACAATGAATCTGTCATCTACTTTCATTTACGACAGTACACCAAGGCATTACCTCTTCTTGAAAGATTGTTTAAGATTGTTGAGCCGCTTGAGGAGACTCTTGGATACAAGATCTGTTTCCTGCTTATTGAAATTTATTTGACTCTTTACAAGGCAGACAAGGCGCACAATGTTTTGACAATACTGGAAAACTTGGTGTTTGGATCAACTAAACAAGTAGAGGTAATCCAAGGTGGACTGCAAGCCCAGCTTGGACCAGGAAACCAATCAGCAGTTCAAACTGTCAAGGATGTTGATGAATCCCTTAAGATCAGCATTCATCAGTATAAAGCACGCCTGAACATCCTTTTGAAGTCAATGAAAGCCTGTAAGCGTGAGATCAAAACATTCATGAACACAAGCAACATGACAGCTGAAAGTCTTTTCCTGAAAAGCAACTTTGAATATCAACGGCAGAACTTTCGGAAATCCATCAAGTTGTTAAACAGTGCACCAAAACCAAATTACATTAAAGACCGAGGGCAGTCCTTGAGCACCATGTACTACAACAACTTGGGATGCATTCACTTCCAACTACACAAATACAACTTAGCAGCATTTTACTTCAGACGGGCTTTGCAAGAAAATGATAAGGCTCTTGCTTCATTGCCGCCTGTTGATAAAAATGCCCCAGTATCCAGCCGCTCTCTGGTCACACTTGGTGTTAACCGCCGCCATGAGATACTGTATAATCTAGGGATCCAGCTGCTGTTCTGTGGTCGACCTGGGGTAGCTTTTGATTGCCTGGTTGAAGCTGTTCAAGTGTACCACACAAATCCTCGCCTGTGGCTCAGACTAGCAGAGTGCTGTATTGTATCATTTCAACTGTCTGATGATTTTCGGCAAAAATGCATCAAGAAGAGTGATGTCATTCAGGATGTTGTTGGTTCAGGACCACATCGCAAAATTGTTCTTTCACCTCAAACAGATAAGCAGTATAGCTCAGAAGAGAGTAAAGGTCAATCATCTGCAATGCCAGCTTGCACTCTTGCATTTGCATCACTGTGTCTTCAAAATGCTCTGATGCTGTTAAAGAGCGCAGAGGTTTCTACAGTTCATGAATCAGAGAGTGCCCTTCTGGAAAATCAAGTGGCCAGGGAAGATGACTCTGTCAATCAAGAGATGGATGCCTCCAGTGACAATGGTGGTCTCGGCAGATCTTCAAACATACAAAGTGAGGCAAGTATTCCTGCCCCTCCTGGACCACCCGTTAAACTGCGCGAGCTTCCACATCTCAGGTGCTCCATTCTCGCCTGCAGTGCTTATGTGGCCCTTGGATTGGGAGACAATGTGATGGCCTTAGCTCATGCACAGAGACTGTTATCACAATCTAACCTCCTGGGAGCACTCAAGTTTCTAGGTCATTTATATGCCGCTGAAGCTCTCATCAAACTGAGTCGCTTACCAGAGGCCATTATGCACCTGTCAACGGAAAATGTCAACAATATATCCATTGTGCCTCCTTGTGGAGCAACTGACAGTGTAGTTTCAAGTGACAGTGCTGACAAGGACAGTTCTAAACTTCACATGTGCGAGAAGATGTACTTTCCACAATCTTTAAGTGAAGCAAGGGCGTCGTTTCTGGTCAATTTAGCAGGCGTGTACAGCTTACGCAGTGAATTTGACAAAGCGCGCAAGTGTTTACAGCAGGCCTGTGCACAAGGTTATTCCAAAGAAATGTCTTCACGAATGGTGTTACTGGCCGTCTACATAGAGCTACAGAGTGGGAACGTGGCAGGTGCACTTCAGACCATCAAGAAGCATCAAGTTCTTTCAATGACCAAGGTACTGGGCAAAACCATAAAGAAGACTCGGGGAGCAGACATTTGGAAAACATAA

Transcript

aflo_s0421.g17.t1

GATCATCTCCAGCCTAATGTCAGACAATCCAGTTGATAATAGTGATGGACCTGCAGAAGCCATTCCTAGAGTTGGTGTTACTGATGCCCAACGTGAACTTGCTAGCAATGCCCATATTGAATTTGAAAGTAAACATTATGATAGGTGTTTGTTATCTCTGAACAAACTCTCAGAACTGAGGAAGAGTGATAAAAAAGTGCAACATAACAGGATAGTTGCACAATTCTACATGGTAAACTGCACTGGAAGTGACGAATCTGCAAAGAATTTTATGAAGATAAGAAAACAGATCGAGAAAGAGAGTGGCGAAACTGGTGATGATTTGGATGACATTGACATGGCTCATCTTTTGTACAATGAATCTGTCATCTACTTTCATTTACGACAGTACACCAAGGCATTACCTCTTCTTGAAAGATTGTTTAAGATTGTTGAGCCGCTTGAGGAGACTCTTGGATACAAGATCTGTTTCCTGCTTATTGAAATTTATTTGACTCTTTACAAGGCAGACAAGGCGCACAATGTTTTGACAATACTGGAAAACTTGGTGTTTGGATCAACTAAACAAGTAGAGGTAATCCAAGGTGGACTGCAAGCCCAGCTTGGACCAGGAAACCAATCAGCAGTTCAAACTGTCAAGGATGTTGATGAATCCCTTAAGATCAGCATTCATCAGTATAAAGCACGCCTGAACATCCTTTTGAAGTCAATGAAAGCCTGTAAGCGTGAGATCAAAACATTCATGAACACAAGCAACATGACAGCTGAAAGTCTTTTCCTGAAAAGCAACTTTGAATATCAACGGCAGAACTTTCGGAAATCCATCAAGTTGTTAAACAGTGCACCAAAACCAAATTACATTAAAGACCGAGGGCAGTCCTTGAGCACCATGTACTACAACAACTTGGGATGCATTCACTTCCAACTACACAAATACAACTTAGCAGCATTTTACTTCAGACGGGCTTTGCAAGAAAATGATAAGGCTCTTGCTTCATTGCCGCCTGTTGATAAAAATGCCCCAGTATCCAGCCGCTCTCTGGTCACACTTGGTGTTAACCGCCGCCATGAGATACTGTATAATCTAGGGATCCAGCTGCTGTTCTGTGGTCGACCTGGGGTAGCTTTTGATTGCCTGGTTGAAGCTGTTCAAGTGTACCACACAAATCCTCGCCTGTGGCTCAGACTAGCAGAGTGCTGTATTGTATCATTTCAACTGTCTGATGATTTTCGGCAAAAATGCATCAAGAAGAGTGATGTCATTCAGGATGTTGTTGGTTCAGGACCACATCGCAAAATTGTTCTTTCACCTCAAACAGATAAGCAGTATAGCTCAGAAGAGAGTAAAGGTCAATCATCTGCAATGCCAGCTTGCACTCTTGCATTTGCATCACTGTGTCTTCAAAATGCTCTGATGCTGTTAAAGAGCGCAGAGGTTTCTACAGTTCATGAATCAGAGAGTGCCCTTCTGGAAAATCAAGTGGCCAGGGAAGATGACTCTGTCAATCAAGAGATGGATGCCTCCAGTGACAATGGTGGTCTCGGCAGATCTTCAAACATACAAAGTGAGGCAAGTATTCCTGCCCCTCCTGGACCACCCGTTAAACTGCGCGAGCTTCCACATCTCAGGTGCTCCATTCTCGCCTGCAGTGCTTATGTGGCCCTTGGATTGGGAGACAATGTGATGGCCTTAGCTCATGCACAGAGACTGTTATCACAATCTAACCTCCTGGGAGCACTCAAGTTTCTAGGTCATTTATATGCCGCTGAAGCTCTCATCAAACTGAGTCGCTTACCAGAGGCCATTATGCACCTGTCAACGGAAAATGTCAACAATATATCCATTGTGCCTCCTTGTGGAGCAACTGACAGTGTAGTTTCAAGTGACAGTGCTGACAAGGACAGTTCTAAACTTCACATGTGCGAGAAGATGTACTTTCCACAATCTTTAAGTGAAGCAAGGGCGTCGTTTCTGGTCAATTTAGCAGGCGTGTACAGCTTACGCAGTGAATTTGACAAAGCGCGCAAGTGTTTACAGCAGGCCTGTGCACAAGGTTATTCCAAAGAAATGTCTTCACGAATGGTGTTACTGGCCGTCTACATAGAGCTACAGAGTGGGAACGTGGCAGGTGCACTTCAGACCATCAAGAAGCATCAAGTTCTTTCAATGACCAAGGTACTGGGCAAAACCATAAAGAAGACTCGGGGAGCAGACATTTGGAAAACATAACATCATTTATTAGTTCAACTTTAATCAGTCGTTCCGTTTATCGACAAACTGAATGACACTAGCCTTGTGACTGTATTCTCCAACACAAACTTGGAAGACTGAAATTGTAGTGTAGTTCAGTTTGCTAAGGTCTAATTCATACTTCTTCTAGTCTTTGGCTCAATGGCGAGACATTTCACCATTGCGTGGCAAGTTTTAGGGGTAAAAAAAGTCCTTTGTTATGAATTGAGAAATAAAATGTCATGTTGCAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IFB6	CCR4-NOT transcription complex subunit 10 OS=Bos taurus OX=9913 GN=CNOT10 PE=2 SV=1
Q9H9A5	CCR4-NOT transcription complex subunit 10 OS=Homo sapiens OX=9606 GN=CNOT10 PE=1 SV=1
Q4R350	CCR4-NOT transcription complex subunit 10 OS=Macaca fascicularis OX=9541 GN=CNOT10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005855 (this species only)

Pfam domain

No Pfam domain signature was detected for aflo_s0421.g17.t1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR039740 all species →	Family	CCR4-NOT transcription complex subunit 10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12979 all species →	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006402 all species →	Biological Process	mRNA catabolic process	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0030014 all species →	Cellular Component	CCR4-NOT complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12607	CNOT10; CCR4-NOT transcription complex subunit 10	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.