Gene detail

Detailed information of aflo_s0440.g21.t2 in Acropora florida

Genomic Location: sc0000440_pilon:317456...330474
NR annotation: XP_029203019.1, COP9 signalosome complex subunit 1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0440.g21.t2

TTAACTTGAAAAGTTGATGTTGTTTCCATAGTTCGGGCAGTTAACATTTCTGTCAAGGAAAAATGCCTTTACCAATTAGAATAAATCGACCTCATGAGAATCCAGCGGAACCCATGCAAGTTGATGTACCACCCGAAAACAATCATGCCACCAATGAAGACACCTTCATCATCGAGTCCGCCACTTTGGACTTAGATGTCTATGCATCTAATTACACTGGCTTAACCAAGCTCAATAGGTTGCTTTTTGTTGCTCGGCACTGTCCATTGTTAGAAATTGATGCCTTGAGGATTGCATTGACTTATGTAAAACAGACTTTTAATGTTCAGTTGTACCAAGATATAATGAAAACAATGACGGAAGCATGCATTCAAAATGAAATTGAACCACCACCTATTGACACTACATGGATGGAGACCACAAGTAAAAAAGCTGCTCTTAAGTTTGAAAAGCTTGATTCAGATCTGAAGAACTACAAGAGTAATTCCATCAAAGAAAGCATTAGACGTGGACATGACGATCTTGGTGATCATCATTTTGAATGTGGCGACCTCAACAATGCATTGAAGTGTTACTCCAGGGCAAGAGACTACTGCATGAGTGCCAAACAGGTTGTTAACATGTGTGTCAATGTGATCAAGGTCAGTATTCATTTGGGTAACTGGTCCCATGTGTTGAACTATGTTAACAAGGCTGAAAATACATCAGAGCTAGCAGAGCAGAAAGATCGCCGCCCTAACTTGGTGACACTGACAAGGTTGAAATGTGCTGCAGGTCTTGCAGAGCTTGCTTCCAGAAAATACAAATCTGCTGCCAAGAATTTCTTGCAATCCTCTTTTGACAACTGTGAATGTCCAGAGATCATTTCACCCAACAATGTGGCCATCTATGGAGGTTTATGTGCCCTTGCGACATTTGAAAGACAGGAGCTTCAGAAGAAGGTCTTATCAAGCAGTTCATTTAAGCTGTTTTTGGAGTTGGAACCCCAACTGAGAGATGTATTATACAAGTTCCATGAGTCACAATATGCTGCTTGTCTCAAACTGTTGGATGAAATGAAGGACAATTTCATGTTGGATATGTACCTTTCACCACACGTCCATACCTTGTACAGCCAGATAAGAAACAGAGCGCTTGTGCAGTATTTCAGTCCCTACGTGTCAGCAGACATGGAAAAGATGGCGCGTGCATTTAACACAACAGTCCCTAAACTGGAAGATGAGTTGTCAAACTTGATACTTGAAGGTCAGATTCAAGCCAGAATCGACTCACATAACAAGGTCAGATTCAAGCCAGAATCGACTCACATAACAAGGTTCTGTTCGCCCGGAACGTTGATCAACGAAGTGTGACGTTTGAAAAAGCCTTGGAAATGGGAAAAGAATATCACAAAAGAACAAAGGCCTTAATTCTTCGCGGAGCCATCCTTCGCAACCAGATCGTTGTCAAAAGCCCTCCACGCGAGTCAAGTTCCAATGAAGTCTCTATGCCCGTTACCAGATAGACACAAGCGAGAGACAACAGAACTGTGGCAAACTGAAAGAGTTAAGTGCTTGTGATACACATACTACCGATCGTGTTTGGAAAAGAAATGCAGCCTCCTGGAAAAGAAGTCAACTGAAGTTGATTGAACATCTCCGCAAGTATTCCTTTGTGTTTGTGTTTCTTGATGAACTGAACCGTTCTCTGCAAGATTAGTGCTTGGCGGTAGAGATGTGTTTGCTTTGGGCAGAGTCGAGCGCTTGAAAAGTTATAATATAGTAATGCCTATTCCGACTAAGTTGTGAGAAAACGGCGTTATTTTAAGTTGATATCTACTCTGTACTGTGGCTGGACGTTTTCATATTCTCTTGCAAAGAGATTATCGATaaaactaagtgctgttaggagccgatgagtaggagaatgcaactcccatactatgcctatgtcacggcatttttacagactgatctatttttagtatacctttcttttgtgaaagaaaggcagttccggtcc

Protein

Uniprot

Uniprot term	Description
Q6NRT5	COP9 signalosome complex subunit 1 OS=Xenopus laevis OX=8355 GN=csn1 PE=2 SV=1
Q13098	COP9 signalosome complex subunit 1 OS=Homo sapiens OX=9606 GN=GPS1 PE=1 SV=4
Q99LD4	COP9 signalosome complex subunit 1 OS=Mus musculus OX=10090 GN=Gps1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01399	PCI	PCI domain	Domain	Interproscan
PF10602	RPN7	26S proteasome subunit RPN7	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000717	Domain	Proteasome component (PCI) domain	Interproscan
IPR045135	Domain	26S proteasome regulatory subunit Rpn7, N-terminal	Interproscan
IPR019585	Family	26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14145	26S PROTESOME SUBUNIT 6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008180	Cellular Component	COP9 signalosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12175	GPS1, COPS1, CSN1; COP9 signalosome complex subunit 1	-	Ubiquitin system	ko04121	deepkoala