Gene detail

Detailed information of aflo_s0442.g12.t1 in Acropora florida

Genomic Location: sc0000442_pilon:148756...161387
NR annotation: XP_044181735.1, LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0442.g12.t1

TTGAAATTGAACTGTACGTTTTCGAAACATGTTTTTGCGGCTCCTCTCTAGCTGAACGAGGTCTCGACAACACGAATTTCGATCCGGTCAATGGAAGACCTTGACGAATCATGTGTTCGCACGGAGACCCATCTCGTCAAGAGTCTGGTGTGGGTAAAATTTTCATTAAGAATCTTGACAAAAGCATCGATAACACAGCGCTGTACGACAGTTTGAGTGCATTCGGGAATATCCTGTTTTGTGAGGTTGCTCTAGCAGAGGACGGTACGTCCAAAGGATTCGGCTTTGTTGACTTCGACTCGAAAGAAGCCGCAGAGGATGCTATTGCAAAAGGGAACGGCATGTTACTGAACGGCAAGAAAGTGGTAGTTACCAAATGGATGTCTCCTAGGGAGCGGCTGGAAAAGCTCGATAGCCAGCCCCAGAACTTCACCAATGTCTATATCAAGAACTTTGGCGAGGACATGGATGAAGAACGACTCAGAGAGCTTGCTGTAAAGTTTGGAAATGTTCTAAGGCTGAAAGTAGTGACTGACAAATCTGGTTGCCCCAAAGGGTTTGGATTTGTCGACTATGAAACACCTGAACAAGCTCAAAAGGCAGTGGATGAACTGCATGGAAGAGAATGGAATGGTCAGAAGCTGTATGCTGCAAGGGCTCAGAGGAAGGCCGAGAGACAAAAGGAGCTCAAGTCCCAGTTTGAGAAGAAAAAGCGTGAGCGCATCAATCGTTACCAAGGTTTGAATTTGTTTGTCAAGAACTTAGACGACAGCATTGATGATGGCCGTCTTAGAGAGGAGTTCAGTGCATATGGTACCATCACCAGTGCCAAGGTCATGACAGACAATGAGGGCAACTCCAAAGGGTTTGGTTTTGTTTGTTTTTCGTCACCTGAAGAAGCCAACAAAGCAGCCACTGAGATGAATTGCAGGATTTTGGTGTCCAGGCCACTTTATGTTGCCCTGGCACAGTGTAAAGAAGAACGCAAAGCACAACTTGCAGCCCAGCAAATGCAGCGCAGAGCTGGCTTAAGGATGCAACAGGCAGCTGGCCAATCAGTTGGACAGGTGTTTGCTCAAGGAGGAGAATTGTACATGCAGCCGTTAGCCCAGGGGGAAACACCTCAGGTGCCAGGAGGAACCGGAGGAATGCAAGCTCAAAGGCAACCCCTTAAATTTGGACAAAATGTAAGGAATCAGCCACAAGGACATTCTGGAACTGTTGGAATGGAGTCTCAAAATCCAGTACAACAAGCCATTCATATACCTGGACAAGAACCCCTCAACTCCAGGGAGTTGGCAGTAGCCTCTCCTCAAGAACAGAAACAGATCATTGGGGAGCGCCTGTACCCCTTGATTCAGTCAACACATCCAGATCAGGCTGGTAAGATCACGGGCATGCTGTTAGAGATTGACAATGCTGAGCTGTTGCACATGCTGGAGTCCTGCGATGCTCTTGCTGCCAAGATTCAGGAAGTTGTGTCTGTACTGCGTGCCCACAGTGCCAAGGAGAAGAGTGAGGAGATAAAGAATTGAAGCTAACCTTGGTTCAGTTTTACCGGACCAGACTTCGCAAAAACCAATACTCCAGATGTATCAACATTTCTCTCTTTTGAAGTGTTGACTAATGTTTTTTTCCAGCCCCCAAAATTAATCCAAAATATTTAGGTTTGTCTCAATTATTCAGTTGATAGTTGGTTAACCCAGTATATAGACCACTCGTATTTCTTTTTGATGAAGCCGATTAAGTTAGTGTCATTCACATGTTTGCTAACCTTAAAAAGCGTCATGAAGTCATGAGTCGCTTGACGGGCTCTTGTCAGTAACCACAAGCTCTGTAGCTGCGTCACTTACAGCCTAATGTCATCGGATACAAGTGGCAAAACAACACTCACTGCAATTCAGTTATTCTGCGATCCACCACAAGTCtacggtggcccacaagggacatgctgcaaattaaaaagttgctgcaaataaaataaagttgctgcaaattaaataaagttgctgcaaaatt

Protein

Uniprot

Uniprot term	Description
F1QB54	Polyadenylate-binding protein 1A OS=Danio rerio OX=7955 GN=pabpc1a PE=1 SV=1
Q9EPH8	Polyadenylate-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Pabpc1 PE=1 SV=1
P29341	Polyadenylate-binding protein 1 OS=Mus musculus OX=10090 GN=Pabpc1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00658	PABP	Poly-adenylate binding protein, unique domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR036053	Homologous_superfamily	PABC (PABP) domain	Interproscan
IPR045305	Domain	PABP, RNA recognition motif 2	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR002004	Domain	Polyadenylate-binding protein/Hyperplastic disc protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13126	PABPC; polyadenylate-binding protein	-	Spliceosome	ko03041	deepkoala