Gene detail

Detailed information of aflo_s0447.g11.t1 in Acropora florida

Genomic Location: sc0000447_pilon:242846...246871
NR annotation: XP_044178256.1, uncharacterized protein LOC122960249 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0447.g11.t1

GGATCAAGAAGTTCAAGTTAGCATCGAAGAGAATAAAAGCGTTTCCGTATCACCTGTTTCCAGTTGTGTAGAAGTAAATAGCATTAGAGTTTGACAGATTAACAAAGTTCCCGTGTTGACTCAACACGATGTTTTCCCAAGGTCAACTGATAGTTCAAAAGGTCACACTTGTAGTAATGTCTCATCGGTGGAAGAAGGAACAAATTTTCAAGACAATAATAGTAAAGTCGTATCACAATGTTATGTAGCACAAAGATTTAAAGATAATTCAGTTATTTCGTCACAAGAAATTCAAGTTTTTCCCGCCGAAGCCAGTATGTGCGTGCCCTCCGAATTAAGGCCATGTATTACAGAACCTGTCATTCATGTAAGCAAGCCAAATGTACAAGAGTCTGTTGTTTTCTACACTGTGGAGACGGAACTCACTGACGCCGAAGTAGTGCAAAGCCCGTGCACGTTTATCGAACCAGTAGTTTTGTGTCGTGAACTTCATGTGGAAACAGCCACATCCTGTGTTTTGGATATTATATTTCACGCGACATGTCATAGTCCGGAACCAGCGGTTAATAGGAGTGTCAACTCAGATAGGGCCCATGTTAATGCCTCGCATCTGTCACGCACCCATCGCGAAACCAGAGGTGTCAGTGAAAATCCTGGCGTATCACAAGCTAAGCTAGTCCATTTTCTTTTAAGAATACTCTGTTCCTATTACGGAAAGGACACACTGAAGAAAAACCTTTTGGCCAAGAACACCCATGTTAAGCAAACTATCGGCGTTAGCATCCCTTCGGTTCAGATGGCTGATCTGCGAAAAGAAGATCAACACCCAACCAAATTTACCCAAGGCAATGTACCTGTTCGTTCTGATGTCAACGAAGATCACTTGTTATGCTCTGAGGTCAAGGTCGATTGTTTAAATGACGTTTACGAAGTTAATGACCGATTTATAGCCCTCGTGAGTTACGATACTCTGCCACTGTCACGCGTTGTCACGTGTTGGTTAAGgcgatcgtatggcacctgtgaactcaacgcgctcgatagcccaggcttacaatcacaacgcatccacgactttcaacgcagagaccccgacctctgggagatcatcgattatctagaaagcgagcgcttacccgcagataatgctcgggcaaaaagaattcttttatctgaagacatttatttcttaggagcccatgatttactgtaccatctggacttgtccgaaaaacgaggtcgtaaagagcggcacgcacaactagtgttaccttcacccctacgttacgaggttttagtaaatgcccatgatgacctcaccggtgggcacttaggtgttttcaaaacgtacgagaagcttcgagatcgatattattggaaaggtatgtacaaagatgtcgagcattgggtacgctcttgtcaagattgttcaacacgtaagaagcctaggaacaaacgccacgcccctttgctcccaatcccggtttccggtgcgtttgaaaggatcgccgttgatgtccttggccctttgccagccacgtggtctggcaaccgttacatcgtctgtttcatcgagtatttaactaagtggccggaaatctttgccgtaaaaaacatagatgctgttacaattgcgcgtctacttacggacgaaattataccacgccatggggcaccacgcactttactttcggatcgaggcaagaattttctatcgaatctagtacgcgaagtgtgcaacctgtacagtattaaaaaattaaatacgagcgcttacaatcccacatgtgatggtctggtggaacgcttaaactccactttatgccagacactgtcgatgtttgtcagtaaacaccaaaaagactgggataccttcattccagccgccttgctcgccattagaacctcgccgtctgaatccaccggggaaagtccattttacttactttacggaagggaacctctactccctatggatgtcagtttgttaccaccatccgatccagctagctccattgaagaacaccgtcggaaaattgtcaaacaaattgagttagctcagcaaattgcgaaggaaaatatcatgcgagcgcaacagaaaatgaaaacgtattatgatcaacatgcatctgaggcaaatttcgttgaggggcacaaagtctgggtctttacccccgaaacttataagggattgtccaaaaaattatttaacaattattcgccgaaggcgaagtgaatattggtgaatattccccgagacgaagtcgaggggaatattcaccaatattcacgagcctgaggcgaataattgttttagtataattactcaggtgattatagaaatattttaccacaatttgccattgttgataagagttcataccacgctgctcgcatcaacgtgtcacgcaatgcctttttaaaaaatacattttctttgacgtt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR052160	Family	Gypsy Retrotransposon Integrase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47266	ENDONUCLEASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan