Gene detail

Detailed information of aflo_s0536.g12.t1 in Acropora florida

Genomic Location: sc0000536_pilon:110706...124196
NR annotation: XP_015776370.1, PREDICTED: protein kinase C and casein kinase substrate in neurons protein 2-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

aflo_s0536.g12.t1

TTTCAATTTTTTTCAATACTTGAGGTTTCCAGGACATGTTTGAAAATGACACTTTTTGTCGAAAAAAAAATAGCGGCTTCATGTGTGGGTAACAATTCTTGACTCTTTCGTGACTTGTGTTGCAGACATTTCGCAGATAACCTTTTCTGACCCAACAAATTGCGGTAAACTTTTGGTAATAAAAATACAGTATCGTCGGCCTCTTTTACTCCTTATCAGAGTCAACATTGTGTTATTTTCTTGTTTGCTAACCGATAAGTGCTGGCTGGCGTCAAAGCAGAAGTGTTAAACCGAACACAAGATTTTCGTATCGAAGTGATCGATTCATAAAAACCAAACACAAAATATGCGCGTTATCGTTGCTAGCCAGCGTGCAGAAGCAAACGTTTGCGCATGCGGATGATTTAGAAAGGAAAACATCTCCTCCCATCGGCACAACCGCAGATGAATTGTATGGGAGAGAAAATGCGAGAAAGGGTATCGTCGTGGGGATAAGAAAAAGTCACTTTCGCAGGTTTCGACATTGGTATGGCTATGCGCGAAACTCCAAGAGGTTCGGACGAGAACCTTTACAGCGCCACGAGCGACAGTTTTTGGGATGTTGGGAATTTCAAAAGAACAGTTAAGCGAATAGATGACGGTGCAAAGTTATGTGATGAATTTATGAAGCTTGTGGCCGAAAGGGCTGAAATAGAAGCTAAGTACGCCATGAAGTTAAAAACTTGGTCGAAGAAGTGGGAGGAAAGTATTAGAAGTGGCCCAGAATATGGAACTATGGAAGAAGCGATGCGAGGATGTGCCGGCGAAGCAGAATCAAGAGCTGAGATTCACATGTTATGCCGCGACAAACTTTTTGACGAAGTCTACGAGTCCATTAAAAAGTGGAAGAATGAAAACTATCACAAAGGTATCTTTCAATGGAAAGAAACAAAAGAGGCCGAGGAAGGATTTAGCAGAGCTCAGAAGCCTTGGGCCAAACGCTTGGCCAAGGTTGAGAGGTCGAAAAAAACTTTCCATAATTCATCAAGAAACGTAGAACAGGCTTCGAAGTTAGAAAATGACGCTATCAGTGAAAACGAAATGCCAGATGCTAAGCTGAAAAAATTGCAAGACGCTACCGTAAAAGCAAAACGAGAAATGGAGAAGTGTCGAGAGAAGTATGAACTGCGCTTGGAGGAAATCTCGAGCTATAATTCTCAGTACGAACGAGATATGATTCAAGAATTTGAAAGATGTCAAGAAAACGAGGATGGACGTCTTACGTTTTTCAAAGATGTACTTTCTCGGTACCAGAAATGTTTAGACATCTCAGAAAGTCCTGAATTTGCAGGTATTTTTGTCAACATGGGCCTGACTTTCCAGCGGGCAGATGCACAAGCTGATTTAGACTGGTGGGCACGGAATCATGGCACTGGTATGCCGCAAAACTGGCCAATATTTGAGGAACATAATGTAATACCATCCAAACGGCCGTCAATTATGCGGCACAATCATGCAAAAGCAAATCCTCAACCAGAGACTCAGAATCATGTAGACGACAATACAGACTTTTCTCATCAAAATGATATGGTACAAAGTAATGCCTTTGGCAATTACACATCAACAACAAATGGAAGCAACAGTGAACCATCTGGCCCTAGCGAGTGGGAAATCGAACCGCCACCCATTGAAGATGCAGGCATACCTGTCAAGGCCTTGTATGACTTTCAAGGAATTGAGGATGACGAGTTGAATTTCAGAGAAGGCGATGTCCTCACTCAACTTTCTTCGCAAGATGACCAAGGCTGGTGTCAAGGGAGATTTAAGGGTAAAGTGGGACATTTTCCAGGTTCATATGTGGAACCCCTGTGATGGTGGAGTTAATAGTCCATTAAGGGGTGTAGGCTAGGGGCAGATATTTAGATGGCTCATAAGTAGTCAACACCTACCGGTAATATACCTTAAGATAGCCCCATTGACAAGTAAAGTGATCTAGTGAAAGCTAGAGAAAATTTCATGACTGCCATAATAAGTGGCACAATGGTTAATACCATACCGCTACTAACCCCTCTTAAGGGGTGGCCTGTTTTGTGATGAAATTGCCTTTCTCTTTTTGCCTATAAAGATATAGAAGTGTCTTTGTCAGAGGCACAAAGATAGATGCATCAGTGGAACTTCTTGCCACCCCTTGAGGTGTGTTTCATTGAGGAGTGAAATTATCTGGAGTTAGCAAGGGTAAAGTCTATGTCATGGTTAGCCTTCATAACAGGACCGTAGCAAGCCAAGGacaaagtgtgcaatagaccattttacagtttcttgcttagttgcctggcctttgaatgaaagtgaggctggaggggaccttgttttgatagaaacctacctgcttttctcattcatgttaatgatgctgttctcatgctaattagtaggaatttgcatatgaaaagcagtaaagtttctatcaaaacaaggtcaactccagcccctttttcattcaaaggccaggcaactaagcacacaactgtaaaatggtctactaacctgtgtggagtaagagatgaaaggGAAGGAAAGATCACTTTTCTTTGCCTCTCGCCTTCTGCTTCCTGCTTATGTTTGAAACTTTGCATTCGGCCTCATGAGCTCCTGTCAGAGAAACTTCCTTCAAGCCAGCAGGCATAATTAAACCAATTTCCGCTCAACCTTGGACGTTTCAGCCATTTTGGCTCTCTTTGTGAAGCAAATGGATTACCAGTGTAACATCATTTTGATGAAAATATTTATCGAAAAATTCTAGTTAATCAACTAATCAGTAACAATGCTATCATTTGTTGATGAGGAAAAGAAAGGTCATTGATTTCTTCTTACGTGTTCAGCAAATTCGGCGGTTTCGGGGGGATGAGTTTTCTGTGGAAAAAATATAGCTTTTTTTTGTTTTCGTTTTTCGTGCCCTCTTTGAATAATATTATGCAACCATTCGTGCTCAGAAAATTTGAAGTCTCTTTAAGGCCTAAGGCCAGGGAAGAAAATTGAATTTGTTAAGCTTGAGTTGTAAGAATTGTAATCGTATACTAAGACAATAAGATATACCATTCATGCTCTGAAAATGTGAACGTTCTTAAATAGCTGAATATTCTTCAAGCTTAGTTTATAAGCATAATCATAAACTAAGAAAATAAGATATTGAAATTCATTACAGCTGTATATTTCTTTTGACTTAAAATGATTTCAATAAGGGAACTGAAGATTATAAGTTATCTATTTAATCAATGTCTTGCATGCACACGAGGTACATTGTAAAAAAAATGTTATGTAAAGAGTTTGATCCAGTCCAACTCATTTTGTTAAAGCGAAGCACAATAAGTTGTAGTCTAATAATTATTTTTATCGAGGTAATCGAAGTGGAGTAAGATATTGGAAAAACAATAAACTTAATTAACACTT

Protein

Uniprot

Gene family

Uniprot term	Description
O13154	Protein kinase C and casein kinase substrate in neurons protein 2 OS=Gallus gallus OX=9031 GN=PACSIN2 PE=1 SV=1
Q4V920	Protein kinase C and casein kinase substrate in neurons protein 1 OS=Danio rerio OX=7955 GN=pacsin1b PE=1 SV=1
Q9DDA9	Protein kinase C and casein kinase substrate in neurons protein 2 OS=Xenopus laevis OX=8355 GN=pacsin2 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00611	FCH	Fes/CIP4, and EFC/F-BAR homology domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031160	Domain	F-BAR domain	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001060	Domain	FCH domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005543	Molecular Function	phospholipid binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007010	Biological Process	cytoskeleton organization	Interproscan
GO:0030100	Biological Process	regulation of endocytosis	Interproscan
GO:0097320	Biological Process	plasma membrane tubulation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20123	PACSIN; protein kinase C and casein kinase substrate in neurons protein	-	Membrane trafficking	ko04131	deepkoala