Gene detail

Detailed information of aflo_s0552.g2.t1 in Acropora florida

Genomic Location: sc0000552_pilon:40024...60365
NR annotation: XP_015775256.1, PREDICTED: uncharacterized protein LOC107353435 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

aflo_s0552.g2.t1

ATGTCACTCAGTCTCCCAGAGAAAAAGATTCTGGACATACAGAACAAATGTCAAAGTCTCATTCGCAATCCCACTACATCAGCTCGTGCAGTGGCAAGCCTCATAGGGACATTGGAAGCAGCCCGCCCTGCCATCTGGCAGGCCCCGCTACACTACAGACAATTACAAATACAGCTCATAAAATCCCTACAGGCTTCTCGGGACAATTACGAGACACTCATGTCCTTAAAAAGCAATGCTCGCACCGAACTTCAGTGGTGGCTCCACAACATAACAACTGTAAACGGCAGCACCATCAATCCTCCTGCCCCCGAGTTGTACATAACCTCAGACGCCTCCAAGGCAGGCTGGGGTGCATGCTGCCAGAGTCTAACCGCAAATGGTCGCTGGTCTCCTCTGGAAGCCAAAGATCATATCAATGTTCTCGAACTCAAAGCAGCTTTTCTTGCCACCAAAACGTTTCTCAAACATCATTCCAACATCACTGTGTGTCTCCGCATGGACAATATCACAGCCGTTGCCCACATAAACAACAAAGGGGGTACCCGTTCCCCTCAGCTAGTCAACCTAACTCTAGAACTATGGCAGTGGTGCCTTCAAAAATCAATTCTGATCACCGCTCAGCACTTACCAGGCAAACTCAACAATGTGGCAGACAGAGAGTCAAGAGAGTTTTACGACTCCAGCGAATGGCAAATAGACCCACAAGTGATCCAGCCCTTCCTAAGAAGGTGCAGTGTAGATCTCTTTGCGTCACGCCTAACGGCTCTGCTCTCAACTTACGCCAGCTGGAAACCAGACCCAGGGGCTACCTACACAGATGCAATGACCCTCCACTGGTCCCTTCTCAAAGGCTACGCCTTTCCACCATTCAGTCTGATCGCACCAGTACTGAAAAAAGTGTCTCAGGACAAAGCAGATTTGGTCTTAGTGGCCCCAGTATGGCAGGCACAACCTTGGTGGCCAGCCCTCCTGAACCTGTTAATCAAGAATCCTGTCATGATCCCAAACTCCAAACACCTGCTGAGGGACCCTGCGTCCCCTCTGAGAATCCATCCAATGTACCCCAGGCTTCATTTAGCCGTCTTTCAGTTATCAGGGAACAGCACCAAACAGAAGGGTTTTCAGAGGACATTACCAGAATACTGCAATCAGCAACTCGTGCCTCCACACATAAGACATACCAGTCAGCCTGGGGACTATGGCATAGCTGaaaaccttgctctcaagaagaccgcagaacaatcatccaggcaaaatgattctagtggagcaggaaatgcagtggacgggaatcgcaatccgctgtttgatgcgaatagtaactgtgccctcacaaaaacagggaaccccagctggtggcgagtggacctgggtactaatcgtgtgccagtttcagatgtttttattgtgaacagactctttccaccatctgcgctgcaaagtaacggatattacaagatcacactagtaccctcggagggtccaaaggtcgtttctttttacgaggtgaatcaaaccactctctggatttcctgggatAAACTAGAAAAACATAAGAGGAATAACATTATTATTGGACACGAAATTAAACGTGAAAAGGCATCAACCGAAGCAAGATCCAAACCATCTATTGGAGACACCACCTACAGCAACTCAGCAAACAGctttgccctcgtaactggctttcaacctggatgcaactataGtatatctgtgcgagccttcacttcagctggaggcggaccctttggcgaaaaaaagacgctaaaaatctcaaattcagtacctccctactgggaagtgaagccgatcacacgtacagaggtagaactcaactggataaacccatcactccgtccaactgaggtttccaattacacggctgatatgatcaccgcaatagcaaaaggagacctggaaatgttcaggtctgaacaagattcaaaccctgacctctgcgatacctgtacagtcgatacagtgatctatctaccaGttgagctataccagcCcaactggcgaagggttattatgcgagttcatgataacccgttgaagatggacaatatatgtgaagtcttccatcgattccgaggcattcagcacagtgttCcaccagttgagctataa

Transcript

aflo_s0552.g2.t1

AAGATTCAAAAGTAAACACTCAATTAACCCTAGACCTCCTGCAGTGGCTAGGCTTCACCATAAATTGGGAGAAGTCCCTCCTAGTCCCCACTCAATCTTTGACGTTTCTGGGCCTCTCCATAGATTCACAGACAATGTCACTCAGTCTCCCAGAGAAAAAGATTCTGGACATACAGAACAAATGTCAAAGTCTCATTCGCAATCCCACTACATCAGCTCGTGCAGTGGCAAGCCTCATAGGGACATTGGAAGCAGCCCGCCCTGCCATCTGGCAGGCCCCGCTACACTACAGACAATTACAAATACAGCTCATAAAATCCCTACAGGCTTCTCGGGACAATTACGAGACACTCATGTCCTTAAAAAGCAATGCTCGCACCGAACTTCAGTGGTGGCTCCACAACATAACAACTGTAAACGGCAGCACCATCAATCCTCCTGCCCCCGAGTTGTACATAACCTCAGACGCCTCCAAGGCAGGCTGGGGTGCATGCTGCCAGAGTCTAACCGCAAATGGTCGCTGGTCTCCTCTGGAAGCCAAAGATCATATCAATGTTCTCGAACTCAAAGCAGCTTTTCTTGCCACCAAAACGTTTCTCAAACATCATTCCAACATCACTGTGTGTCTCCGCATGGACAATATCACAGCCGTTGCCCACATAAACAACAAAGGGGGTACCCGTTCCCCTCAGCTAGTCAACCTAACTCTAGAACTATGGCAGTGGTGCCTTCAAAAATCAATTCTGATCACCGCTCAGCACTTACCAGGCAAACTCAACAATGTGGCAGACAGAGAGTCAAGAGAGTTTTACGACTCCAGCGAATGGCAAATAGACCCACAAGTGATCCAGCCCTTCCTAAGAAGGTGCAGTGTAGATCTCTTTGCGTCACGCCTAACGGCTCTGCTCTCAACTTACGCCAGCTGGAAACCAGACCCAGGGGCTACCTACACAGATGCAATGACCCTCCACTGGTCCCTTCTCAAAGGCTACGCCTTTCCACCATTCAGTCTGATCGCACCAGTACTGAAAAAAGTGTCTCAGGACAAAGCAGATTTGGTCTTAGTGGCCCCAGTATGGCAGGCACAACCTTGGTGGCCAGCCCTCCTGAACCTGTTAATCAAGAATCCTGTCATGATCCCAAACTCCAAACACCTGCTGAGGGACCCTGCGTCCCCTCTGAGAATCCATCCAATGTACCCCAGGCTTCATTTAGCCGTCTTTCAGTTATCAGGGAACAGCACCAAACAGAAGGGTTTTCAGAGGACATTACCAGAATACTGCAATCAGCAACTCGTGCCTCCACACATAAGACATACCAGTCAGCCTGGGGACTATGGCATAGCTGaaaaccttgctctcaagaagaccgcagaacaatcatccaggcaaaatgattctagtggagcaggaaatgcagtggacgggaatcgcaatccgctgtttgatgcgaatagtaactgtgccctcacaaaaacagggaaccccagctggtggcgagtggacctgggtactaatcgtgtgccagtttcagatgtttttattgtgaacagactctttccaccatctgcgctgcaaagtaacggatattacaagatcacactagtaccctcggagggtccaaaggtcgtttctttttacgaggtgaatcaaaccactctctggatttcctgggatAAACTAGAAAAACATAAGAGGAATAACATTATTATTGGACACGAAATTAAACGTGAAAAGGCATCAACCGAAGCAAGATCCAAACCATCTATTGGAGACACCACCTACAGCAACTCAGCAAACAGctttgccctcgtaactggctttcaacctggatgcaactataGtatatctgtgcgagccttcacttcagctggaggcggaccctttggcgaaaaaaagacgctaaaaatctcaaattcagtacctccctactgggaagtgaagccgatcacacgtacagaggtagaactcaactggataaacccatcactccgtccaactgaggtttccaattacacggctgatatgatcaccgcaatagcaaaaggagacctggaaatgttcaggtctgaacaagattcaaaccctgacctctgcgatacctgtacagtcgatacagtgatctatctaccaGttgagctataccagcCcaactggcgaagggttattatgcgagttcatgataacccgttgaagatggacaatatatgtgaagtcttccatcgattccgaggcattcagcacagtgttCcaccagttgagctataagttcaactggaagcgggtcattgtgtgagttcatgataactcgtgaaagatggaggtcgatgtacaatatatttcaAAgtcatac

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR052055	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan