Gene detail

Detailed information of aflo_s0674.g1.t1 in Acropora florida

Genomic Location: sc0000674_pilon:1...27620
NR annotation: XP_015777040.1, PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

aflo_s0674.g1.t1

CTTTCACATGACCCTCGTGCAAGTCCTTCAAATCGACAAAATAACACCTTTAGAGAGTTGAACGTGGAGCCTTCAACTTCACAGCAGTGTAGTATCTTAGTGGAAGGTTTACCAAATGATGCAACCAAGGATCGTGTGTTGAATTACTCTGAAAATAAAAGGCGATCAAAAGGAGGTCCAGTCGTCGACGCTGACATGAATTCTGATTCCAGAACATGTCGTGTCATCTTTGAATCTCCAGATGACGCCATCAGAGTAGCCGAACACTCTCCTCACAACCTCTTTGGCACCTGTCTTAGTGTGTCTCTTATCAAAGAATTTGAGAAGGAGGAAGAGGATCACAGCATTGAAGAAAACACAGAGGAAGTGGAGGATAAGCTTACCGTAATCGTAAGCGGCCTCAGGTCTACAACTACAAAGGATACCGTTTTTGATTACTTTGAAAATTCACGCAGATCGGGAGGAGGGGAGGCTCTCAACGTTGATTTTAATGAACAGGGAGATGCCGTGGTAACTTTCCAGGAGGTGAAAGATTCCAAAAGACTGCTGGAGGGCAGGCACAAGATAGATGGAACACCTATCGAGGTTAGAGTGCAGCCTCCAAAGAAAAAGGTACCTCCTGACCCTGTCATGGCACACGTGCAAGGCCTCAACCTCGAGAAGACAAGTAAAGACGGCATGGAATTATACTTGGAAGAATTTAGCAACGTTGAAGTGAAGGATATTCAATTTGGTTCCAACGATAACGTCTTTGATAGCGAACCAGttaccatggatatcaaaacctttctggacaacatttacgaacatgtatgctgtcccgtgtgtttgtgcaggttcaatcatccaaaacagcttccttgtttgcacagtttttgccttcactgtctgcaaagaattcaagcaagcagcggaattcgagacactattttatgccccgagtgtcggcaaaacttcaccatccctggaaacggtgatctcaacactttaccgacaaactttcacctgaacggtttgttggatgctttgcccgtcacagagtgcaaaacgagtggcgtcaagtgtggaaattgcgacaaaagaagacaattgcaagagtcttcctactgcttcacttgctgttcgttctggtgcgatgactgccttccttcacataacagcatcaaaacttttaaggaacaccacacgttggctcagaaagattttagacatgaagacttcgagaacattttaaagcagccaacattttgcgaaaaacacgagaagaaggaattagagctgttctgtcaggtatgcacaacaacaatatgtggttcgtgtgctttcatagatcacgaaggtcatgctaagatttctgttgaagaagctgcaaaagaacaaaggttgagaataaatagagcgattgaatcaaagaaacgaaaagcgcagaagaaggtgacaataatcgccaaacttgatgaataccgtacccaagttcaagaaaacgcagcaagagtaaaaagcggggtacagcagtttagtgacaatctcatgacagcgattgaagcgaaaaagaacaaaatcgttgctgaggtagaaaagaaagcaaaacagtgcctgaagcgactaggagacaaacgtcagcagatggaagaaaacatgaaaaggaaccaaacagaaatcgaaaaatgcgacaagatgttaaagcgaagcacaaacgtccaaatcatgcagccaaatgaatttctagaccaactatttcgggaggaaagtgcgcaagaagacacagttgaccttgacggcgtgaatgtcatagattttaattttgaaagaaataaagaattgtcgaatgacattcacgccaaacgactgggctttttgaaaataaaaactaacgcgaaagagtcgacggctgagggaaaaggaatcagcgaaggaactgttggacttttggccgagatttttgtcattacacgtaccattatgggaaaacaagtctacgatcgaaagaaccgcgtaacaatgaaaatcagaaatcatgaaggacatgactgttcaacgaaacctcaaatctacgacaacaaagatggcagctataagatcagctactttgccaaagaaaccggaacatgtcaagcatccgtgaaagttaatggacaacatgtgcatggcagtcccttcaaaattgaattcaaaTCCAGACTGTTCAAACCCGTGTTATCCTTTGGAAAACAAGGATCAGCTCCTGGAATGTTTAATTTGCCTTGGGGGATAGCAGTGAATGACAAAGACGAGATTGCCGTGGCTGATAGTGATAACCATCGCATACAAATATTTCGTAGCGATGGAACTCACTTAAAATCGTTTGGTATAGAAGGTAAACTGCAGGGACAGTTCAGCTATCCTCATGGGATAACCTTTCATAATAATAACATTATAGTGTCAGACACTTATAACCACCGAATTCAAATCTTTGATGATCAGGGACATTATCGTCATCAGTTTGGAGAAAAAGGGGAACTGAATCACCAGCTTAACCGTCCTCGTGGCCTGTCAATTGACAGCGATGGCAACATTATTGTCGCTGATTGGAACAACAAATCAATCAAGATCTTTACCCTTGATGGACAGTTTTTGCGTAGAATCGGTGAAGAAGGTTCTTTCAACCATCCCAATCACTGTATCCAACACGACAACTGTTTTATTGTATCGGACAATCATTGTATAAACGTTTTTGATAAACAGGGCAAATTTCTATACAAGTTCGGGATGAAGGGGACTGCGGACGGAGAGTTTGATTCGCCTCGCTTCCTTTCTCTGGACAAAGCCGGACATCTGTTGGTTTGTGATTCATGTGATGGCCGAGTGCAGGTGTTTAAACTCAACGGAGAGTTCATAACAAAGTTTGGAGTGTCTGatcacgaaggtcacgctaagattgctttggaagacgctgcaaaagaacaaaggttgagaataaatagtgcgattgaatctaagaaacgaaaggtgcagaagaagctgataagaatcgcaaaacttggtgaaaacagtgtccaagttcaagaagacgcagcaagagtaaagagcgacgtacagcagtttactgacaatctcattgcagccattgaagcgaaaaagaacaaaatctttgatgaggtagaaaagacagcaaaacagtacctgaagcgactaggagacaaaagtcaggagattggagaagaaataaaaagggaccaaacagcaatcgaaaaatgcgacaagatgttaaagcgaagcacaaacgcccaaatcatgcagccaaatgaatttctagaacaactgtttcgggtgggaagtaaccaacaagacacagttgaccttgacggtgagaatgtcatagattttgcttttgaaagaaatgagcaattgttcaactacgttcacgctgaacaactcggcgttttgaaaataaaaactaacccgaaagagtcgacggttgagggaaaaggaatcagcgaaggaactgttggacttttggccgagattgttgtcataacacggaccattatgggagaacaagtctacgatcaaaataaccgcataacaatggaaatcagaaatgatgaaggacatgactattcaaccaaaccccaaatcaacgacaacaaagatggcagctataagatcagctacgttgccaaagaaaccggaacatgtcaagcatccgtgaaagttaatggacaacatgtgcatggcagtcctttcaaaacggaatttaaaccacgattgttcaaacctgtgttatcctttggaaaacgaggatcagctcctgggatgtttaatatgccttcgacggggataacagtgaatgacaaagacgagattgccgtggctgataatggtaaccatcgcatacaaatatttcatgctgatggagctcacttgagatcttttggtagacaaggtacacagcaaggacaattcaactctccttatgggataactttttataataataacattatagtgtctgacactgctaaccaacgaattcaaatctttgatgatcagggacactatcttcatcagtttggagaaaagggaaaactcaatcaccagcttgatcttcctcgtgggctgtcaattgacagcgatggcaacattattgtcgctgattctaacaacaaatcagtcaagatctttaccctcgatggccagtttttgcgtagaattggtgaaaaaggttctttcatcaatcccgttcactgtatccaacacgacaactcttttattgcatcggacaatggagataattgtataaaagtttttgatagacagggcaagtttctttacaatctcggaatgagaggggctggagacggggagtttaatttgccccgctacctgtctgtggacaaagccggacatctattggtttgtgattcgtggaataaccgagtgcaggtgtttgaactcaacggaagtttataa

Transcript

aflo_s0674.g1.t1

Protein

Uniprot

Gene family

Uniprot term	Description
O75382	Tripartite motif-containing protein 3 OS=Homo sapiens OX=9606 GN=TRIM3 PE=1 SV=2
Q6PFY8	E3 ubiquitin-protein ligase TRIM45 OS=Mus musculus OX=10090 GN=Trim45 PE=1 SV=2
M9PH32	Protein meiotic P26 OS=Drosophila melanogaster OX=7227 GN=mei-P26 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00643	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00630	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF01436	NHL	NHL repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR017868	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR027370	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR050952	Family	Tripartite Motif and NHL Repeat Containing E3 Ligases	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001298	Repeat	Filamin/ABP280 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24104	E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan