Genomic Location: sc0001222_pilon:5997...22885
NR annotation: XP_044164486.1, LOW QUALITY PROTEIN: sodium-coupled neutral amino acid transporter 9 homolog [Acropora millepora]
Species Acropora florida · all data for this species · gene families
| CDS |
| aflo_s1222.g2.t1 |
| Transcript |
| aflo_s1222.g2.t1 |
| Protein |
| aflo_s1222.g2.t1 |
| UniProt accession | Description |
|---|---|
| Q08BA4 | Neutral amino acid transporter 9 OS=Danio rerio OX=7955 GN=slc38a9 PE=1 SV=1 |
| Q8BGD6 | Neutral amino acid transporter 9 OS=Mus musculus OX=10090 GN=Slc38a9 PE=1 SV=1 |
| Q3B8Q3 | Neutral amino acid transporter 9 OS=Rattus norvegicus OX=10116 GN=Slc38a9 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004294 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01490 all species → | Aa_trans | Transmembrane amino acid transporter protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR013057 all species → | Domain | Amino acid transporter, transmembrane domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22950 all species → | AMINO ACID TRANSPORTER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003333 all species → | Biological Process | amino acid transmembrane transport | Interproscan |
| GO:0015179 all species → | Molecular Function | L-amino acid transmembrane transporter activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14995 | SLC38A9; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 9 | - | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Acropora florida tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Acropora florida, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
