Gene detail

Detailed information of aflo_s2495.g1.t2 in Acropora florida

Genomic Location: sc0002495_pilon:1...5846
NR annotation: CAH3157914.1, unnamed protein product, partial [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

aflo_s2495.g1.t2

AGCAGAAACTTTACAGTGGTAAAGTTGATGCCACCTTCTTCTCGGTCAAATGATTCCAAAGGTAGCTTGGTACCACAAGAATCCAACACAGGTGTCATGGCGGACCAGGGATCTGCTTTCCTGGGGAAAGAAGCGGACTCATTTCGCTTTCACAGGCCTGGGTTCGAGCACGTGCCCGGAAGTGTGTCATTAGAATCTTCGACACATCCAGGTCTTTATCTTCGGTACAAGAATTACAAGTTTCACTTGGAAAAGATGAAGCCATCAGGAGTGTTCGGATGGTTTATGTGTCACGATTCAACAAACAAATTAGGTCTGGTGGCAAGAAAACTTGACATTGGTAGCAAGGAGTTTCTTGAGAGATGCTTGTACATGGCCGTAGCAGTAACACCAAATCCAACGAAAAAAGTCACGACAAATCAAGCGCCAACTGCGAGAACAAATATTCAAGAAATTACAGGCGATATTTCCAGCGCTCTTTCTATGGAAAATGTGTCGAAAAGCCTAAATGTTAAGAACGGTAATAAGAGTGAAGTCAGAAAAAATGACGATGCACAAAATGCCGGAAAAGTTAACACTACACTTAGTAAAACGCCGCAGGTTGAAAGCCTCACGAATTCTACTTCTGATAAAAATAACAGCGAATCTAAAAGAAAATATGAGTTCTCGTCAAATAAAACAGTTGCAGGTTCCGCAAACCAAACAGCACCAACACAAAAGTTGAATGCGGAGAAAGTAGTAAATAACACTCAAGTCACAATCGCTTCACAAAATGCGCTGAAGATGAATTTAAGTATTTTAAACAAGACCAACATTATGGCTTCCCACCCACAGCAAATTCTTGTTCACCACAACAAGAATCCACAAATAGGCTGGTTGAAGACCATTCCTTCAGACTCTGAACCAGCAAAAGCTGAAACAGCGGCGCTTCATATCCAGAATACTTTACTGGGCGCGTTCACAGCTGCTAAGCAACAGGCAATAAGCAGAAACTCGACAATGGCAAACGGAATTGGTGAGATAGCAGGAAAAGTCAGTTATCAAACGCAAAATGGTGGCAGCACTGTTTTGATGCAAAACCATAACTCGTTTAATTTTCCTAACGAGGAAAACAGGACGGTAAATTCGGCTGCATATGGATCACGACAATTTAATCAACAACTTTACAGGCCAAATAGTCTGAATCAAGGAAACAAATTTCTGGCAATCACAAACCGCGACCCTGCACGTTCCCATCAAGCACTTCCCGGAAGACAATTTGCTCAGCTTAGTGCAAAAGCAGCCGCATTTGTTAACACTGCATTAAAAAATCAACGAAACCCAGCAAGATCACGCTCAATGGGACCACAAAGAACAAAAGGAGTTGGTTTGCCTTATGGACAACAACAGCGGTTGAACCGACCATTAAACTATTACAAACTACAAATGAGCCCGCAAACAAGACTCCGCACTCCCAATATAATAACTGCGCCAGCGCATTCCGCCCAAGGAAGACCACTGATAAACCCCGCAGGCCTTACAACAACAGTTCAACAGGCTCAGTTCAAGTACAAGCAACCACCGCTGACCAACAGTGGTTTCAAATACCCACCAGGCAGCTGGGGAGGAATGACGACAGTCGGTGGACAAACTTCAGTCGGGTACAACAAAGCTTTTCAGAACTATAGGCCAACAAGACCTTTTGAGGAGAAAACAGCGGCTAAGCTGGAAAATGATATGTCTGACAAGACACCAGATAAACATGACAAATGTATTAGCATGAAGTTCATAAACAAAATTCGTAAACCAATCAAACTTGTCTCAAGCATGAAGCTTGGCGGCTATCTTATCACAGCTGAAACGTTTAAACTCAAGACCATCTTCAAACATCCACGAAAGCACCATCACGTGATACTCTACGCCCGTGACGCAGATGACATTGACAACGAAGTATTGCTCAACAATAATAACGCAATCGCTGTCACACCAGGAGGATGTGACTTGCCGTTTAGGAGTGTGTTATTGTCACATCATGGTCAAATTTCAAATGTTGAAATTGAACGTCTTCGCGAAGAAGACGAATATACAGCTTCCATGGAAGCATTCAAGAAGGCCAGTCACGACAAAGGAGACGAGAATTTATCACAGTGGACTGCTTTCGGGGCTTGTGCAGCAACGTGTGGGAGAAGCATACAGACCCGAACACGCATGTGCAAGACGGACAAGATTTGCAAGGAGCCGACTATTCAGAGCAGAACCTGCATTCAAACACCATGTCCAAGGGAAACTTGTATCAAGACTTTCACCGGCAAGTGTTGCGCCCTTCCATTTGTATTCCGCGGTGCTGCAGTAAACCGATGTCTTATTGATCCGAAGACCAACCGCTCGTGGTGCGCAGTGACACCAAATTTTGACACGGAAAAACGATGGGGATATTGTCAG

Transcript

aflo_s2495.g1.t2

CAAGCAGAAACTTTACAGTGGTAAAGTTGATGCCACCTTCTTCTCGGTCAAATGATTCCAAAGGTAGCTTGGTACCACAAGAATCCAACACAGGTGTCATGGCGGACCAGGGATCTGCTTTCCTGGGGAAAGAAGCGGACTCATTTCGCTTTCACAGGCCTGGGTTCGAGCACGTGCCCGGAAGTGTGTCATTAGAATCTTCGACACATCCAGGTCTTTATCTTCGGTACAAGAATTACAAGTTTCACTTGGAAAAGATGAAGCCATCAGGAGTGTTCGGATGGTTTATGTGTCACGATTCAACAAACAAATTAGGTCTGGTGGCAAGAAAACTTGACATTGGTAGCAAGGAGTTTCTTGAGAGATGCTTGTACATGGCCGTAGCAGTAACACCAAATCCAACGAAAAAAGTCACGACAAATCAAGCGCCAACTGCGAGAACAAATATTCAAGAAATTACAGGCGATATTTCCAGCGCTCTTTCTATGGAAAATGTGTCGAAAAGCCTAAATGTTAAGAACGGTAATAAGAGTGAAGTCAGAAAAAATGACGATGCACAAAATGCCGGAAAAGTTAACACTACACTTAGTAAAACGCCGCAGGTTGAAAGCCTCACGAATTCTACTTCTGATAAAAATAACAGCGAATCTAAAAGAAAATATGAGTTCTCGTCAAATAAAACAGTTGCAGGTTCCGCAAACCAAACAGCACCAACACAAAAGTTGAATGCGGAGAAAGTAGTAAATAACACTCAAGTCACAATCGCTTCACAAAATGCGCTGAAGATGAATTTAAGTATTTTAAACAAGACCAACATTATGGCTTCCCACCCACAGCAAATTCTTGTTCACCACAACAAGAATCCACAAATAGGCTGGTTGAAGACCATTCCTTCAGACTCTGAACCAGCAAAAGCTGAAACAGCGGCGCTTCATATCCAGAATACTTTACTGGGCGCGTTCACAGCTGCTAAGCAACAGGCAATAAGCAGAAACTCGACAATGGCAAACGGAATTGGTGAGATAGCAGGAAAAGTCAGTTATCAAACGCAAAATGGTGGCAGCACTGTTTTGATGCAAAACCATAACTCGTTTAATTTTCCTAACGAGGAAAACAGGACGGTAAATTCGGCTGCATATGGATCACGACAATTTAATCAACAACTTTACAGGCCAAATAGTCTGAATCAAGGAAACAAATTTCTGGCAATCACAAACCGCGACCCTGCACGTTCCCATCAAGCACTTCCCGGAAGACAATTTGCTCAGCTTAGTGCAAAAGCAGCCGCATTTGTTAACACTGCATTAAAAAATCAACGAAACCCAGCAAGATCACGCTCAATGGGACCACAAAGAACAAAAGGAGTTGGTTTGCCTTATGGACAACAACAGCGGTTGAACCGACCATTAAACTATTACAAACTACAAATGAGCCCGCAAACAAGACTCCGCACTCCCAATATAATAACTGCGCCAGCGCATTCCGCCCAAGGAAGACCACTGATAAACCCCGCAGGCCTTACAACAACAGTTCAACAGGCTCAGTTCAAGTACAAGCAACCACCGCTGACCAACAGTGGTTTCAAATACCCACCAGGCAGCTGGGGAGGAATGACGACAGTCGGTGGACAAACTTCAGTCGGGTACAACAAAGCTTTTCAGAACTATAGGCCAACAAGACCTTTTGAGGAGAAAACAGCGGCTAAGCTGGAAAATGATATGTCTGACAAGACACCAGATAAACATGACAAATGTATTAGCATGAAGTTCATAAACAAAATTCGTAAACCAATCAAACTTGTCTCAAGCATGAAGCTTGGCGGCTATCTTATCACAGCTGAAACGTTTAAACTCAAGACCATCTTCAAACATCCACGAAAGCACCATCACGTGATACTCTACGCCCGTGACGCAGATGACATTGACAACGAAGTATTGCTCAACAATAATAACGCAATCGCTGTCACACCAGGAGGATGTGACTTGCCGTTTAGGAGTGTGTTATTGTCACATCATGGTCAAATTTCAAATGTTGAAATTGAACGTCTTCGCGAAGAAGACGAATATACAGCTTCCATGGAAGCATTCAAGAAGGCCAGTCACGACAAAGGAGACGAGAATTTATCACAGTGGACTGCTTTCGGGGCTTGTGCAGCAACGTGTGGGAGAAGCATACAGACCCGAACACGCATGTGCAAGACGGACAAGATTTGCAAGGAGCCGACTATTCAGAGCAGAACCTGCATTCAAACACCATGTCCAAGGGAAACTTGTATCAAGACTTTCACCGGCAAGTGTTGCGCCCTTCCATTTGTATTCCGCGGTGCTGCAGTAAACCGATGTCTTATTGATCCGAAGACCAACCGCTCGTGGTGCGCAGTGACACCAAATTTTGACACGGAAAAACGATGGGGATATTGTCAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00040	fn2	Fibronectin type II domain	Domain	Interproscan
PF00090	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036943	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR013806	Homologous_superfamily	Kringle-like fold	Interproscan
IPR000562	Domain	Fibronectin type II domain	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR036195	Homologous_superfamily	Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0046373	Biological Process	L-arabinose metabolic process	Interproscan
GO:0046556	Molecular Function	alpha-L-arabinofuranosidase activity	Interproscan