Gene detail

Detailed information of agem_s0002.g167.t3 in Acropora gemmifera

Genomic Location: sc0000002_pilon:2298865...2325302
NR annotation: XP_029193630.2, putative RNA-binding protein EEED8.10 isoform X4 [Acropora millepora]
Species abbreviation AGEMM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

agem_s0002.g167.t3

ATGAATAGACTTTCTTCAAACTTGCACAAACTGAGAGCGCTCCATCAACAGGAACGGAGCAGAGGTTTATTTGCAGCTATATCGTATGACTCTGTCCTCGTGGAAAAACCGATCACATCAGTGCAAACTACTAACTGTCTCGGAAGTGTCATAATCCCTTTGCAATCGGGAGAGTTGTTGCAAAAAGCAAAGGAATTTTGCCGCCAAACTCGAGTGGTTGCAAATAAGTGTAAAGTGTTCGTTGGCAACGTTAGTTACAGGGTTAAGTCAAGAAAACTGAAGGAGTTTTTCAAAAATTTTGGAGAAGTGATTTACGCCGAAATCATAACGGATTATAAGACAAAACGCTCTCGAGGTTTTGGATTTGTGACATTCAGCAATGAATGGGAAGCAGAGAGAGCCAAGAATTCTTCAGATGAAAAGAGAACTTTGGAAGGAAGAGTTATGGCAGTCTGTTCAGCAGAAAGAAAGAAAAGAGGAAGAAGAATATTAAACCAAGAGACTAGCTTGGAAGAGGCTTTGGAATTTTATGCTAAGAATGATGAGAGTAGAGAAACAGATGGTGTAATGGAAGATGATTCTTGCAGCAGTGACACAAAGCAGTATTCTGAGCCACCAATATTTCGACTCAATGAGGATGCCATTCTTCACATTTTCTTGTATTTAAGTGCAAAAGATAGGATACGCATTGAAAGGGGAAGAAGAATATTAAATCAAGAGACTAGCTTGGAAGAGGCTTTGGAATTTTATGCTAAGAATGATGAGAGTAGAGAAACAGATGGTGTAATGGAAGATGATTCTTGCAGCAGTGACACAAAGCAGTATTCTGAGCCACCAATATTTCGACTCAATGAAGATGCCATTCTTCACATTTTCTTGTATTTAAGTGCAAAAGATAGGATACGCATTGAAAGGGTTTGCAGGAAATGGAGAGTGTTAGCAATTAAGTCATGGCGTCATACCACCCACCTTGACTTCCAAGGGGTTTTTGCTTCATTCAGAGGTGTTGGAGGTCTTACTGATGAAATTCTGTGGTCCATTTTGAGACGAGGTTGCCATAACCTGAAGTCATTGGATTTGTCTCTTTCACCTCATTTCTTGACTGATTTTTCAGTCCTTTGCATTGCAAAACAGTGCAAGTCATTGGAAGAGCTGAAAATCAGTGGTGTGGAAATGAGTACATCTTCATTGAAAGTGCTGGCTAAAGGCTGTTCAAACCTGGAGAAAATTACCCTTCAGGGGTGTTATAAAGTTGGTGAAAAAGCGCTCTGGTGGCTTTTTAAAGATTGTAAGAAACTGACATACATCAATTTACAAGGAAATAGAAGTCTTAAAGGCCAGTGTTTCTTTATGCTGTCACCAGTATGTGTGGATCTCTATCTTAAGGAATGTAATCAGTTAACAGATAAAGGAATAAACCATATTGGGAGCAACTGTAAAAATTTGAAAAACATCGACATCTCGGAATGTAGAACACTAACTGATGAGGGTATTCTTAAACTTACACAGCATTGTTGTCTGATCACGTCACTGAGATTTTCCCAAGCTGGGCCTGACATAACCAGTCAAGGATTACAGAGCATTGGGAATTTAGCATTACTAAGAGAGTTGGATCTGTCCAACAATTATGTAGTAGATGATTCGGTATTGTACAGCATTGGAAGAAACTGTATCCATCTCATTTCTCTTAATGTGGAATCTTGTCAAGTTGGAGTCACTAATGCAGGGTTGCATAGTTTGGTGTCCTGCTATCAGCTCTCTTCACTTTCAATCAGCTATGTGAACAAGATCACCGACGAGGGTATCATTCAGCTGGCGGCTTGTGGATCTTTGGAGCGAGTTGTAGCCCGAGGGTGTACTGGGCTCGCTGATATGTCTATCGAAAGTCTTTTAAAACACTGCCATAACTTGACGTTGTTGGATGTTAGCGGATGTTCTGGTATCACAAACTGCTCTCTTGAGCTATTCACTTTGTACTATGGAAGAGGCGATCGACCATTTCTTACCTGCACATTGGGAGGTACAGCAGTGGAGGAGAACGAAATCTTGAGAGTGCAGCCGACGTTGTGTCAGTGTCAGCTTCTTTGCAGTGACTTTTCCATCCCTGAAAGGACTGAGGCTGTCCCTTCGTATGGTTCAGGTGCCTTCTACTGCGAGGGAAATGAGGACGATGACGACGAGTTTGACGATTTCGCTGACGATGAAGAGGACGATGATGACAAACATCTCCTTAACGTTCTTGATGACGAAGAGGTTTGGATGGCTGAAGACTCGTTGTGGTGGCGACCCGATGATGCGGTGGATTTCCTTGAAGCCGATTATCCCTCTTTGTTGGCAGAGCAGCTGCACAGATCATAA

Transcript

agem_s0002.g167.t3

GACGCCATTTTGTTTCGTCCATTTTATTCCGAAGTCTAGCACCATTTGTCATCTAAATTGTGATATTTATCGATCCAAAAACACCAAAGTCTACAAAGACTAGCGTCTTTGCAGATGAATAGACTTTCTTCAAACTTGCACAAACTGAGAGCGCTCCATCAACAGGAACGGAGCAGAGGTTTATTTGCAGCTATATCGTATGACTCTGTCCTCGTGGAAAAACCGATCACATCAGTGCAAACTACTAACTGTCTCGGAAGTGTCATAATCCCTTTGCAATCGGGAGAGTTGTTGCAAAAAGCAAAGGAATTTTGCCGCCAAACTCGAGTGGTTGCAAATAAGTGTAAAGTGTTCGTTGGCAACGTTAGTTACAGGGTTAAGTCAAGAAAACTGAAGGAGTTTTTCAAAAATTTTGGAGAAGTGATTTACGCCGAAATCATAACGGATTATAAGACAAAACGCTCTCGAGGTTTTGGATTTGTGACATTCAGCAATGAATGGGAAGCAGAGAGAGCCAAGAATTCTTCAGATGAAAAGAGAACTTTGGAAGGAAGAGTTATGGCAGTCTGTTCAGCAGAAAGAAAGAAAAGAGGAAGAAGAATATTAAACCAAGAGACTAGCTTGGAAGAGGCTTTGGAATTTTATGCTAAGAATGATGAGAGTAGAGAAACAGATGGTGTAATGGAAGATGATTCTTGCAGCAGTGACACAAAGCAGTATTCTGAGCCACCAATATTTCGACTCAATGAGGATGCCATTCTTCACATTTTCTTGTATTTAAGTGCAAAAGATAGGATACGCATTGAAAGGGGAAGAAGAATATTAAATCAAGAGACTAGCTTGGAAGAGGCTTTGGAATTTTATGCTAAGAATGATGAGAGTAGAGAAACAGATGGTGTAATGGAAGATGATTCTTGCAGCAGTGACACAAAGCAGTATTCTGAGCCACCAATATTTCGACTCAATGAAGATGCCATTCTTCACATTTTCTTGTATTTAAGTGCAAAAGATAGGATACGCATTGAAAGGGTTTGCAGGAAATGGAGAGTGTTAGCAATTAAGTCATGGCGTCATACCACCCACCTTGACTTCCAAGGGGTTTTTGCTTCATTCAGAGGTGTTGGAGGTCTTACTGATGAAATTCTGTGGTCCATTTTGAGACGAGGTTGCCATAACCTGAAGTCATTGGATTTGTCTCTTTCACCTCATTTCTTGACTGATTTTTCAGTCCTTTGCATTGCAAAACAGTGCAAGTCATTGGAAGAGCTGAAAATCAGTGGTGTGGAAATGAGTACATCTTCATTGAAAGTGCTGGCTAAAGGCTGTTCAAACCTGGAGAAAATTACCCTTCAGGGGTGTTATAAAGTTGGTGAAAAAGCGCTCTGGTGGCTTTTTAAAGATTGTAAGAAACTGACATACATCAATTTACAAGGAAATAGAAGTCTTAAAGGCCAGTGTTTCTTTATGCTGTCACCAGTATGTGTGGATCTCTATCTTAAGGAATGTAATCAGTTAACAGATAAAGGAATAAACCATATTGGGAGCAACTGTAAAAATTTGAAAAACATCGACATCTCGGAATGTAGAACACTAACTGATGAGGGTATTCTTAAACTTACACAGCATTGTTGTCTGATCACGTCACTGAGATTTTCCCAAGCTGGGCCTGACATAACCAGTCAAGGATTACAGAGCATTGGGAATTTAGCATTACTAAGAGAGTTGGATCTGTCCAACAATTATGTAGTAGATGATTCGGTATTGTACAGCATTGGAAGAAACTGTATCCATCTCATTTCTCTTAATGTGGAATCTTGTCAAGTTGGAGTCACTAATGCAGGGTTGCATAGTTTGGTGTCCTGCTATCAGCTCTCTTCACTTTCAATCAGCTATGTGAACAAGATCACCGACGAGGGTATCATTCAGCTGGCGGCTTGTGGATCTTTGGAGCGAGTTGTAGCCCGAGGGTGTACTGGGCTCGCTGATATGTCTATCGAAAGTCTTTTAAAACACTGCCATAACTTGACGTTGTTGGATGTTAGCGGATGTTCTGGTATCACAAACTGCTCTCTTGAGCTATTCACTTTGTACTATGGAAGAGGCGATCGACCATTTCTTACCTGCACATTGGGAGGTACAGCAGTGGAGGAGAACGAAATCTTGAGAGTGCAGCCGACGTTGTGTCAGTGTCAGCTTCTTTGCAGTGACTTTTCCATCCCTGAAAGGACTGAGGCTGTCCCTTCGTATGGTTCAGGTGCCTTCTACTGCGAGGGAAATGAGGACGATGACGACGAGTTTGACGATTTCGCTGACGATGAAGAGGACGATGATGACAAACATCTCCTTAACGTTCTTGATGACGAAGAGGTTTGGATGGCTGAAGACTCGTTGTGGTGGCGACCCGATGATGCGGTGGATTTCCTTGAAGCCGATTATCCCTCTTTGTTGGCAGAGCAGCTGCACAGATCATAAGAGAATCGAGTTCTACTGGAAGGCCTACTGGTCAATTGTATGCCAGTCTTGGCACGTGCTATTGACATGTGACTAAAGCTTATCCCCCTATTGTCACGTTAATAACTTAGCATAGTGACTGAAAGTTGGACGAGGAAAAGCAACCACCACACTATGCAGTTCCTTGTTGCTCCGGTGTGGATTTACAAAATGCAGGGAAATAGATGCGCGAAAATTTGAAAGGAATTAGATCGGTAGCTAAATGGATTTTGTCCTTGCTTTAGATATTGCGTCATTACTAGCAGAGGGAACTCAATTTAAAGAGCCATAGAGCGTTGGACCTTGTGCTTAATCTTTAAAAAGTATGCTGTTGACTGACCGTTGACAATCCTCTCTGTGTGTTGTTCATTTTTTGCCCTTAGGCAGTCCGAGCAAAAGTGAGTCTTGGCTAGTGTAGTTGTACGCAATTTTATCGTGCTAATGTGCTTGGAGAAATAATTATAATTAAGAGTTCCTTACATTGGTATCATTGATTCCAAAGCCGAGGCTTACCTGTGTCATGTACTATAAGCGTTCTTCTGATCCGATAATACACAATTACAATGCTTTCAGTTGAGCGATTCTTTCTTGTCTTTGCGGTTTCTGCAAAATAACTCCTATTTGAAGGTTAAATTTACCTTACTATGTCTAAAGCATCTGATACTTAGTGAGAGACAAATTAAATGCTCGAGAAGGAGAAAGTTGTCCTTAGGAGGAAACGGAGCACAAAAGGATATTGCGAAAAGTAAAGCTTGGTAACAAGAGTTGCCACGTTCCACAGGCTTTCTGCAGAGAACATCTAAGAAGCCATTAATGGGACATAGCTATGGAAACATTCTACAGTTATCTACCTGGGGATACTGAACAAAATATTTACAAAGAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2
P21522	Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana OX=7009 GN=HNRNP PE=2 SV=1
O89086	RNA-binding protein 3 OS=Mus musculus OX=10090 GN=Rbm3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003790 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.