Gene detail

Detailed information of agem_s0002.g206.t1 in Acropora gemmifera

Genomic Location: sc0000002_pilon:2737167...2744316
NR annotation: XP_029193937.2, notchless protein homolog 1-like isoform X2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0002.g206.t1

CCAGAAAAGAAACGAGATGAGTGACGGTGGGCGTATTCTCGCGCAATTCAAGAGTGAGCTAGGTGAGCTCATAGGAACACCTTTTGATCTTCCTCTTGACATCACACCTGATAAATTGGAACTGATCTGCAATGCTGTACTTCAAAAGGATGAAAGTGTTCCATACACATTTTTTGTCAATGAGACAGAAATCACTGGAAACCTTAAAGAAACTCTTGAATCTCAAACATTAGAGACTGAGAAAGTTGTAGAAATAGTATACCAACCACAGGCAGTGTTTAAGGTCAGAGCAGTGACAAGGTGTACCAGCACAATTCCAGGTCATTCTGAAGCGGTTATTTCTGTAGCATTCAGTCCTGATGGCAGATATCTCGCTAGTGGTTCAGGTGATACTACTGTAAGGTTCTGGGATGTAAACACAGAAACACCTCATTTCACTTGTAAAGGTCATAATCACTGGATACTGCATATAGCTTGGTCTCCAGATGGAAAAAAGTTAGCATCTGGATGTAAAAACGGAGAGATAAGATTATGGAACCCTACAACTGGAAAACAAATTGGACAAGTATTCAAAGGACACCTTCAATGGATTACTTGCCTTAGCTGGCAGCCACTTCACAGTAATCCAGACTGTCGGCTTCTCGCCAGCTCATCAAAGGATGCAACAATCAAAATATGGGATGTTGTCCTTGGTCATTTGCTGCGTACACTATCAAGCCATACTAAATCAGTAACATGTATCAGATGGGGTGGGGAAGGGCTTATATACTCTTCATCTCAGGACAGGACAATCAAGGTCTGGAAAGCAGATGATGGAGTCCTCTGCAGAACATTGCAAGGCCATGCTCATTGGGTGAATTATCTAGCACTGAATACTGACTATGTATTGAGGACAGGATCCTTTGACCCATCAAAAGGTGAAAAAGACGAATTTATAACAGAAAGCAATGAACTGAAAGACAAGGCCTTACAGAGATATTTGCAAGCAAGGGGAGGGAAAAGAGAAAGATTGGTATCAGGATCTGATGATTTTACTCTTTTTCTTTGGGACCCAGAAGAGAGCAAAAATCCCTTAGCACGTATGACAGGTCATCAGGCTTTAATAAACCAAGTAAGCTTCTCTCCTGATGGCCGTCTGATAGCAAGTGCAGCATTTGATAAATCTGTTAAAATATGGAATGGTGACAATGGAAAGTTCATCACATCGCTTCGAGGGCATGTCAATTCTGTGTATCAGATTGCCTGGTCTGCTGACAGCCGTCTGATATGTAGTGGTAGTGCAGACAGTACTCTGAAAGTTTGGGACATGAAGAGCAAGAAACTTTTGGAGGATCTTCCAGGCCATGCTGATGAGGTATACAGTGTTGATTGGAGTCCAGATGGCACTAAAGTTGTCAGTGGAGGGAAGGACAAAGTTCTTAAGATGTGGAGATCTTGACAAAATGTAAAAAAAATATTTAGGGTAAATAACAGATCTGACTTTACATTAGCTGAGAATAAACAATGACCTTACAACATGAAGTGAAGTACCAGTAAACTTTACATGAACCCAACATCTTTATAATATCTATTCTCACCAAAAGCTTGATGCTTAATGTCTGCTAATATCCTGAAACTTAGTTTCCTTAGGTTTTTTTTCTATATCTCTATGTGTTACCCGATGGGCCGCAAAATAAAGGAAATGTATATTTAATAATAATTATTTCTCTTTTATCTTTTTACCATAGATAAGTGAATTTATTTATCAATAACAAACAGTAATAGCATAAACAACCTTAACAAATTACTTAACTTTTGCTACTATCATTTTTCCCCATACAAAATACCCTTTCCCTTTTTTATTAAAACATTCACAAGACAGTTTTGTTAGTGTATATGCAAGTGGACTGAACGAAAACAGTGGTTCTTAAACCACATTCAAAATCTCTTATATTTGTGTGGTTAAGAGCAAAGGGGTTCTAAAACATTAAGTGTAGTTGGAAGTTAACCCCCCTTTTCACAAATAATAACAGTTACTATTATTATTACTAGCGATATTGTCAAGGTAtttaaagtgccactaaatcccaattttttttttcacataaataaactttcacttctgcc

Protein

Uniprot

Gene family

Uniprot term	Description
Q7ZXK9	Notchless protein homolog 1 OS=Xenopus laevis OX=8355 GN=nle1 PE=2 SV=1
Q58D20	Notchless protein homolog 1 OS=Bos taurus OX=9913 GN=NLE1 PE=2 SV=3
Q8VEJ4	Notchless protein homolog 1 OS=Mus musculus OX=10090 GN=Nle1 PE=1 SV=4

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08154	NLE	NLE (NUC135) domain	Domain	Interproscan
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR012972	Domain	NLE	Interproscan
IPR001632	Domain	G-protein, beta subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000027	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14855	RSA4, NLE1; ribosome assembly protein 4	-	Ribosome biogenesis	ko03009	deepkoala