Gene detail

Detailed information of agem_s0002.g264.t1 in Acropora gemmifera

Genomic Location: sc0000002_pilon:3514465...3536363
NR annotation: XP_029195602.2, acyl-CoA dehydrogenase family member 10-like [Acropora millepora]
Species abbreviation AGEMM · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

agem_s0002.g264.t1

ATGATTTTGAAACTGAGAGCTCTTCAATATCAGCATCTTCGCTGCCTGCATCAGTGTTATTCTCGACTCCTTAGCAGCCATGAGCCAATCAAGCCTAAGGCAGTGGCATTTGACATGGGAGGGGTGGTGATCCCCACACCAGTACCCTTATTTAATCAGTTTGAAGATGCTCATGGTCTCGAGAGAGGCTCTATTGTCATGGCTATCAGAGCTGGAGGGGAGAAAGGGTTTGTCTCTGGCACCACAGCTGTTCGTAAGGCTCATCGAATCCCTATCGACTCCCTTCAGAGCTATTTGCAAAGTCAACTGGGCTTACAACAAGATGAGCCCCCAACAGTTCGCCAGTTTAAACATGGACAATCAAATCCAACATATTATGTGGAGTGTGGAGGACAAAGACTTGTAATAAGAAAGAAACCTCCTGGCAAGCTTCTACCTTCAGCACATGCAGTAGAAAGAGAGTACATGGTGATGAAAGCACTTGGCTCTGTCGGGGTTCCTGTGCCCAAAACCTTAGCCTTATGTGAGGACAGCAGCATTCTGGGAACTCCTTTTTATGTCATGGAGTATGCACAGGGACGGTTGTTTAAAGACCCATCACTGCCTGGTATGACTGTGCAAGAGAGAAAGGAAATCTATGAAGCAATGAACAAGACTCTCGTTAAGATTCACAATGTTGACATTGATGCAGTTGGTCTCGGAGACTTCGGAAAACGAGGAAATTATATTCGCCGTCAAACAGAACGATGGGCAAAGCAATATGAAGCTAGCAAAACACACGATATAGCAACAATGGACAAGCTTGTATCTTGGTTGCTGGCCAACACTCCCGAAAATGATAACACGACTGTTGTTCATGGAGATTTTAGGCTAGACAATCTGATTTTTGACGAAGAGAAGCCTGAAGTGATCGCTGTTCTGGACTGGGAACTGTCCACTTTAGGTGACCCCCTGTCTGATTTGGCGTACAGCTGCTTACCACATCATCTGCCTCCAGACTTCCCTGTGTTGAAAGGTTTCTCTAACCTCGATCCCAGTTCTATCGGCATACCGAAAGACACCGAGTACATGGAGGAGTATTGCAAGCGAGCTGGTATTTCTGTTGTCAAAAACTGGAATTTTTACATGGCATTCTCATTTTTCCGCGTGGCCGCGATTTTGCAAGGTGTTTACAAAAGATCCCTACAAGGGCAAGCAAGCTCAGAAAATGCAAAAGCAGTTGGTATGCTGGCTGAGACCATGGCTGAGATAGGCTGGAAACTAGCGTGTACACAGAAGGAATCTAACTCGAAGGGTGTTTCAGAGATGTGGCTTCAACCTCTTTTGGACGGAAAAATAAGGTCTTGCTTTGCAATGACTGAACCCAAGGTAGCTTCTTCGGACGCCACCAATATTGAATCTTCCATTAAACTGGACGGTGATCAATATGTCATCAATGGGCGCAAATGGTGGACATCAGCTTCTTCGGACGCCACCAATATTGAATCTTCCATTAAACTGGACGGTGATCAATATGTCATCAATGGGCGCAAATGGTGGACATCAGGGGGAATGGATCCTCGGTGTAAGATCTGCATTTTCATGGGAAAAACGGATCCTAATGCTGACAAACACAAGCAGCAGGCTATGATCCTTGTTCCCATGGATACGCCTGGCGTTACTGTGGTGCGGCCCTTGTCAGTTTTTGGATACCAAGACCCACCTTGTGGCCATGCTGAAGTTCTCTTTGAAGACGTTCGAGTTCCCAAGGGAAACGTTCTTTTAGGACCCGGAAGGGGATTTGAGATTGCCCAGGGTCGTTTGGGTCCAGGCCGCATCCATCATTGTATGCGACTGATAGGACAAGCCGAGAGGGCCCTGGAGCTGATGATCGATAGAGTGAAGAAGAGGGTAGCATTTGGTAAACCACTGGTTCAGCAAGGAACTATTTTACAGGACATAGCAGAATCTAGAATTGAGATTGAACAGGCCAGACTTTTGACCCTAAAAGCTGCTCATCTCATGGACACAGTTGGGAATAAGATTGCTGCTCCCGAAATTGCCATGATTAAAGTGGTAGCCCCTCGAATGGCGCAAAATGTAGCGGACAGGGCAATGCAGTCATTTGGAGGAGCCGGTCTTTCCTCCGATCTTCCGCTGGCTGTATTTTGGTCCTGGGCTCGCATCCTGCGCCTCGCTGACGGACCGGACGAGGTGCATCTCCGTGCCGTGGCAAAAAAAGAAGTCAAGAGGAACAACCGGAGTTAA

Transcript

agem_s0002.g264.t1

CTACAATTAATCTTAATTTCGGTTGAGAATAAGTGATGATAGTTAAAAATAGCAATGGAGGAGTCAATTTCCCTGAAGAAGCTTAATTAAACGATGATTTTGAAACTGAGAGCTCTTCAATATCAGCATCTTCGCTGCCTGCATCAGTGTTATTCTCGACTCCTTAGCAGCCATGAGCCAATCAAGCCTAAGGCAGTGGCATTTGACATGGGAGGGGTGGTGATCCCCACACCAGTACCCTTATTTAATCAGTTTGAAGATGCTCATGGTCTCGAGAGAGGCTCTATTGTCATGGCTATCAGAGCTGGAGGGGAGAAAGGGTTTGTCTCTGGCACCACAGCTGTTCGTAAGGCTCATCGAATCCCTATCGACTCCCTTCAGAGCTATTTGCAAAGTCAACTGGGCTTACAACAAGATGAGCCCCCAACAGTTCGCCAGTTTAAACATGGACAATCAAATCCAACATATTATGTGGAGTGTGGAGGACAAAGACTTGTAATAAGAAAGAAACCTCCTGGCAAGCTTCTACCTTCAGCACATGCAGTAGAAAGAGAGTACATGGTGATGAAAGCACTTGGCTCTGTCGGGGTTCCTGTGCCCAAAACCTTAGCCTTATGTGAGGACAGCAGCATTCTGGGAACTCCTTTTTATGTCATGGAGTATGCACAGGGACGGTTGTTTAAAGACCCATCACTGCCTGGTATGACTGTGCAAGAGAGAAAGGAAATCTATGAAGCAATGAACAAGACTCTCGTTAAGATTCACAATGTTGACATTGATGCAGTTGGTCTCGGAGACTTCGGAAAACGAGGAAATTATATTCGCCGTCAAACAGAACGATGGGCAAAGCAATATGAAGCTAGCAAAACACACGATATAGCAACAATGGACAAGCTTGTATCTTGGTTGCTGGCCAACACTCCCGAAAATGATAACACGACTGTTGTTCATGGAGATTTTAGGCTAGACAATCTGATTTTTGACGAAGAGAAGCCTGAAGTGATCGCTGTTCTGGACTGGGAACTGTCCACTTTAGGTGACCCCCTGTCTGATTTGGCGTACAGCTGCTTACCACATCATCTGCCTCCAGACTTCCCTGTGTTGAAAGGTTTCTCTAACCTCGATCCCAGTTCTATCGGCATACCGAAAGACACCGAGTACATGGAGGAGTATTGCAAGCGAGCTGGTATTTCTGTTGTCAAAAACTGGAATTTTTACATGGCATTCTCATTTTTCCGCGTGGCCGCGATTTTGCAAGGTGTTTACAAAAGATCCCTACAAGGGCAAGCAAGCTCAGAAAATGCAAAAGCAGTTGGTATGCTGGCTGAGACCATGGCTGAGATAGGCTGGAAACTAGCGTGTACACAGAAGGAATCTAACTCGAAGGGTGTTTCAGAGATGTGGCTTCAACCTCTTTTGGACGGAAAAATAAGGTCTTGCTTTGCAATGACTGAACCCAAGGTAGCTTCTTCGGACGCCACCAATATTGAATCTTCCATTAAACTGGACGGTGATCAATATGTCATCAATGGGCGCAAATGGTGGACATCAGCTTCTTCGGACGCCACCAATATTGAATCTTCCATTAAACTGGACGGTGATCAATATGTCATCAATGGGCGCAAATGGTGGACATCAGGGGGAATGGATCCTCGGTGTAAGATCTGCATTTTCATGGGAAAAACGGATCCTAATGCTGACAAACACAAGCAGCAGGCTATGATCCTTGTTCCCATGGATACGCCTGGCGTTACTGTGGTGCGGCCCTTGTCAGTTTTTGGATACCAAGACCCACCTTGTGGCCATGCTGAAGTTCTCTTTGAAGACGTTCGAGTTCCCAAGGGAAACGTTCTTTTAGGACCCGGAAGGGGATTTGAGATTGCCCAGGGTCGTTTGGGTCCAGGCCGCATCCATCATTGTATGCGACTGATAGGACAAGCCGAGAGGGCCCTGGAGCTGATGATCGATAGAGTGAAGAAGAGGGTAGCATTTGGTAAACCACTGGTTCAGCAAGGAACTATTTTACAGGACATAGCAGAATCTAGAATTGAGATTGAACAGGCCAGACTTTTGACCCTAAAAGCTGCTCATCTCATGGACACAGTTGGGAATAAGATTGCTGCTCCCGAAATTGCCATGATTAAAGTGGTAGCCCCTCGAATGGCGCAAAATGTAGCGGACAGGGCAATGCAGTCATTTGGAGGAGCCGGTCTTTCCTCCGATCTTCCGCTGGCTGTATTTTGGTCCTGGGCTCGCATCCTGCGCCTCGCTGACGGACCGGACGAGGTGCATCTCCGTGCCGTGGCAAAAAAAGAAGTCAAGAGGAACAACCGGAGTTAATTGGGGGAACGGGGGGGTGGTGGAATTGCTCTCTTCAGCGTTGTCACCACACCTGTATGTTGAGGCATTGGGTAAACCCGCGGAGTGGTCTAAAAATATGGGTTAGTGTGATAGGGAATAGCTCAACTGACCGTCTCTTTCCCTCCTTTAATGTTTGTTTTTTTCCCAGTCAAGCTATTATTTCCAAGGGGGGCGTGGATATTAATTGCCGAATTACTTGTCTATCTGAAAACACTCCACCCAGATACTTGATTGTGCGAGTCCACCGCTGTTTTtaataatcagatgttagaaaagtgcgttcgatggattttgttcccttatatttggcatttgcgtgtttcttttggccgaccacttactgcagacatggtcatagccttattctttccaaattcaccataaagcagcttgaatcgaatcgataccagcttgagatcgaggctaagtgtgccacgtagtccgagttggcgtccaaagcctgaaatgacccagcttccgcgatccataGACCCTTATcgaggctggacgggcttaaacgatgagctcaaaataaattatgcattctaaagatggcgtgcgtattgtttatgcccgtccagcctcgtttcaaatccaaaatggcggctgcgtgttaaacccgcgggaatgaaaaacggcgcaaatagtaagcgttctgtcgaacgcaaTAAGAAATTGCAACGAAGCAAATGACTAATGATGTAGAATTTGTTTAATTAACGCTAGAGTAAACGTAATGGGACCCGAATTCTTATTTCAAAATAAGTCGAACTGGGTATTTTGTGAAAGGGTAACTGTCATTCATCCGTAGTAAAGATATTATTTTGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8K370	Acyl-CoA dehydrogenase family member 10 OS=Mus musculus OX=10090 GN=Acad10 PE=1 SV=1
Q6JQN1	Acyl-CoA dehydrogenase family member 10 OS=Homo sapiens OX=9606 GN=ACAD10 PE=1 SV=1
B3DMA2	Acyl-CoA dehydrogenase family member 11 OS=Rattus norvegicus OX=10116 GN=Acad11 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001332 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01636 all species →	APH	Phosphotransferase enzyme family	Family	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050741 all species →	Family	Acyl-CoA dehydrogenase	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR002575 all species →	Domain	Aminoglycoside phosphotransferase	Interproscan
IPR041726 all species →	Domain	Acyl-CoA dehydrogenase family member 10/11, N-terminal	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48083 all species →	MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0033539 all species →	Biological Process	fatty acid beta-oxidation using acyl-CoA dehydrogenase	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11729	ACAD10; acyl-CoA dehydrogenase family member 10	-	Lipid metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.