Gene detail

Detailed information of agem_s0002.g324.t1 in Acropora gemmifera

Genomic Location: sc0000002_pilon:4137057...4147311
NR annotation: XP_029191406.2, LOW QUALITY PROTEIN: uncharacterized protein LOC114957974 [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

agem_s0002.g324.t1

ATGGGTGAAAAGCGAGATTACTCACAGGTGGAGTCTACTCTTGTCTCAGATGGTCACCAAATGACAATGAAACCCAGGAAAAAAGGGCAGAGAATTGATAAAGAAGAGATTTCTTCATTTCAGAGTAAAATTTCTGCAGAAGAAAATGGCAGTGGTGATCAAGACAGAGATACAGAGTTGCCTGAAATGGTAAAAAGGGATTTGTTGGAAGAAGCTGTTAGCCCTGAAAACATAATGGAacaagATCTACAGTCCAATGACAATTCTGTGTCAGTTGATCAGGGAGCCAACACTTCCTTGTCAAAGCGCCTTCGTATGTACAAGTGTGAACGCTGTAAATCCCAATACATGGGATTGGCAATGTTGCGTCAGCACTGCAAGGATGTTCATGGTGACCAGAAATACTACAAATGTAATGTTTGTGGCAAGTTATTTAGCCATCCCAGTAGCAGGAACATCCACTTGCGTCTTCACTCAGGAGAGAAACCTTACAAGTGTAGCACTTGTGGCAAGAAGTTCAGGGTTTCATCGCATTTGAAGGACCATGTTAGGGTTCACACAGGGGAGCGTCCTTATATCTGCGACATTTGCCATAAGGGATTTAAGCAATCCAGTGACCTCAAGAAGCATCGACGCACACACACCTTGGACAAACCTTACAAGTGTCCCATTTGTCCCTCTGCCTTCACTCGCTCACATCATTGCCGTGGACACATCAACTCAGTTCACAAGTTTTACAAATGTGGAGTTTGTAGTGCTTTGTTTACATCTGAAGAAGCATTTGAACAACATAAGGAATTACATCCATCATTCTTCTCTGATCAGTCAAAAACATCATCAGACATTGCTCCTCCAGATTCAAGTGCGGTAGTTCAAGTTTCTGCACCTCAAGACACCAAGGCAGATGACACTGATATACATGAGAAGAACCTGAAATGGGATGTTGCAAATCAATTGCTTGAGCTTCATAAGGTCACACAACATGTTTCCTCATTAAAGAATGCTAATGGCTGTGGATCAGAAACAGCCTCAGAGTCTGGTGATAAATTGAAATCTTCTTTGCATAGGTCATCAGAGGTACTCCAAAATGCTGATGTGAGATCGCAGGCATCATGTACTGTTAATCCTACGTTGACTTATCAGGCAACAAGCACTGATATTTCATCTTCCAGTCACATGGCTAGCCCATTTTTAACACCCGTGGGGGCAAATCAGGGGGGAGGGTTCTTCACCAGATCAGCGGTAGTCAAAGAGAATAGTATTGCGACATCTTTGGATAATAGTCAAACAATCCCTCAAGGTGTTGAATATCATAGGATGTCATTTCAAAATCCTTACTTTGGAGCTAAGAACTCTCTTCCAATCACAGAAAATGGTTTACAAAAGAGTCTGTCACCTTTTCTGCAGTCACCAAGTCCTGGTAAACACTTTCCAGCTGACACATTGGAGCAGAGAGAACTTGTATTAAATCAAATTTATGACGTCTATTCCAAGATGAAGGGCTTTCCCCATCAACAGGTACATTTTGTGCTAAATCCTGTTAGTACAAGTCAAAATTGGAATTTTATAGGGCACAGCCCCAGAGGAGAAAAATCTCAACCCAATGCTGAAGTTCAGAACCCTCAGGGCAATAACAAAGTGCCATGCCATCGCGTATCAGTCATTCAGTACCATTCCAGTGAGTCAAAACTTGTGAATGATTTAAACAATGAAGAGCATTTGCCCAAAAACAGAAATACTTCACTTACTGCATTGCCCTTGTCCAAGGAATGTGAATCTACTAGATCAGACAGAAAATCTCAAATCCAAGAGCTATCTGAAAGGGCCAGGCCTATGAAAGAAGACTTTTTTCCTGGATTTTCTCAAGATAGGGCACCATATGTTCCAGTTAATTCTGATAGTTTAATAGGAGTGCAATCATCACATCAAAAACTTGATGAGCCATTAGGAAAGTACTGTATGGCTTTAAAGGAAGCTGTGGAGATCCATGAGAAAGCAAGGGAACAGGAACATGCCAAGCAGCTTTCTTTGAAGCAGTCAGCAGAAATCAAGCGATTGAGTATGCATTCCGAAGGAAATGCTCAGCCAATAACAAGTACTTTTGACAGATTGCATGTGACATCTGTAGACATGTTGAAGTTTTTGGCTCGAGAGCAAATCAGACAAGGAAGTGGGGAAGGAGATATGAAGTCTCCTCCATCGGGAGGAGAGGAATCAGAAGCATCTGAGGCATCCAAAACTGGAGATGTAGCTCTCAATGGACAGGTTTTCATGGATGAAGGCGAGAATTCGGTACAGCCAAATTCCTCAGAACAAAATTCTCCAGAGGGATCTGTTCACCACTGTCAAGTTTGCAAGAAGACATTCTCCCGTTCCAGCCTACTTAAACAGCACTCAGTAATTCACATGGGGAACAAGCGCTTTAAATTCCGCTGTGAAGTGTGCAGCAAGATGTTTCGGACACGCAGCCACTTACGTGATCATACACGTATTCATACAGGTGAAAGGCCATTTAAGTGCCATATTTGTGAAAAAGCATTCAAGCAATCCAGTGATCTTAAGAAGCACATCAACCTTCACACTGGTGCAAATCAATTCAAGTGTGAGGAGTGCAACATGGAGTTTCGCAGAGCTGATGCACTTAGAAAGCACAAGTTGGGGCACAAGATGGGAAACATGCCTTGTGGGCACTGTGGAAAGAACTTCATGCACATCAGTGCATTAAGGCAGCACAGAGCTATGCACAATGTGCAGCCAGTGAAAACAAACAGAACCTTTCACAGATGCAACTACTGCTTCAAAACATTTACAAAAGCTGAAAGTTATAAGCTTCACATGGAAGAGCACATCAGAGAGCAGAGCATTACACTGTTTGACTGCAAAATCTGCTCCTTGAAATTCTTTAGCAAAGCAGAATTCACAGATCACATGAACATCCACAATGGCAAGAGACCATACAAGTGTTTCATCTGTGAAAAGGAATTCTGCATTGCTGAGCATTTGCAGGATCATGTCAGGCTTCATACGGATGTGCCAGCGAGAATCAGTAATAATAATAATAATTGTGAATGTTAG

Transcript

agem_s0002.g324.t1

CAGCTGGCAACGAGTAGCACACGTTTCGAAGAAGTAGATCAGTTTACCGGTATTTCAGTGTACGTGAAAAATAACTCTTCGCTTCCTAACGTATTCTCCTTTCCTGAATCCTTTGCTGTGGCAAATTGTGAATGTATCGACGCCTTTGCGAGACACACTGTTTGCGTGCTTGAGAGGAAAATGGGTGAAAAGCGAGATTACTCACAGGTGGAGTCTACTCTTGTCTCAGATGGTCACCAAATGACAATGAAACCCAGGAAAAAAGGGCAGAGAATTGATAAAGAAGAGATTTCTTCATTTCAGAGTAAAATTTCTGCAGAAGAAAATGGCAGTGGTGATCAAGACAGAGATACAGAGTTGCCTGAAATGGTAAAAAGGGATTTGTTGGAAGAAGCTGTTAGCCCTGAAAACATAATGGAacaagATCTACAGTCCAATGACAATTCTGTGTCAGTTGATCAGGGAGCCAACACTTCCTTGTCAAAGCGCCTTCGTATGTACAAGTGTGAACGCTGTAAATCCCAATACATGGGATTGGCAATGTTGCGTCAGCACTGCAAGGATGTTCATGGTGACCAGAAATACTACAAATGTAATGTTTGTGGCAAGTTATTTAGCCATCCCAGTAGCAGGAACATCCACTTGCGTCTTCACTCAGGAGAGAAACCTTACAAGTGTAGCACTTGTGGCAAGAAGTTCAGGGTTTCATCGCATTTGAAGGACCATGTTAGGGTTCACACAGGGGAGCGTCCTTATATCTGCGACATTTGCCATAAGGGATTTAAGCAATCCAGTGACCTCAAGAAGCATCGACGCACACACACCTTGGACAAACCTTACAAGTGTCCCATTTGTCCCTCTGCCTTCACTCGCTCACATCATTGCCGTGGACACATCAACTCAGTTCACAAGTTTTACAAATGTGGAGTTTGTAGTGCTTTGTTTACATCTGAAGAAGCATTTGAACAACATAAGGAATTACATCCATCATTCTTCTCTGATCAGTCAAAAACATCATCAGACATTGCTCCTCCAGATTCAAGTGCGGTAGTTCAAGTTTCTGCACCTCAAGACACCAAGGCAGATGACACTGATATACATGAGAAGAACCTGAAATGGGATGTTGCAAATCAATTGCTTGAGCTTCATAAGGTCACACAACATGTTTCCTCATTAAAGAATGCTAATGGCTGTGGATCAGAAACAGCCTCAGAGTCTGGTGATAAATTGAAATCTTCTTTGCATAGGTCATCAGAGGTACTCCAAAATGCTGATGTGAGATCGCAGGCATCATGTACTGTTAATCCTACGTTGACTTATCAGGCAACAAGCACTGATATTTCATCTTCCAGTCACATGGCTAGCCCATTTTTAACACCCGTGGGGGCAAATCAGGGGGGAGGGTTCTTCACCAGATCAGCGGTAGTCAAAGAGAATAGTATTGCGACATCTTTGGATAATAGTCAAACAATCCCTCAAGGTGTTGAATATCATAGGATGTCATTTCAAAATCCTTACTTTGGAGCTAAGAACTCTCTTCCAATCACAGAAAATGGTTTACAAAAGAGTCTGTCACCTTTTCTGCAGTCACCAAGTCCTGGTAAACACTTTCCAGCTGACACATTGGAGCAGAGAGAACTTGTATTAAATCAAATTTATGACGTCTATTCCAAGATGAAGGGCTTTCCCCATCAACAGGTACATTTTGTGCTAAATCCTGTTAGTACAAGTCAAAATTGGAATTTTATAGGGCACAGCCCCAGAGGAGAAAAATCTCAACCCAATGCTGAAGTTCAGAACCCTCAGGGCAATAACAAAGTGCCATGCCATCGCGTATCAGTCATTCAGTACCATTCCAGTGAGTCAAAACTTGTGAATGATTTAAACAATGAAGAGCATTTGCCCAAAAACAGAAATACTTCACTTACTGCATTGCCCTTGTCCAAGGAATGTGAATCTACTAGATCAGACAGAAAATCTCAAATCCAAGAGCTATCTGAAAGGGCCAGGCCTATGAAAGAAGACTTTTTTCCTGGATTTTCTCAAGATAGGGCACCATATGTTCCAGTTAATTCTGATAGTTTAATAGGAGTGCAATCATCACATCAAAAACTTGATGAGCCATTAGGAAAGTACTGTATGGCTTTAAAGGAAGCTGTGGAGATCCATGAGAAAGCAAGGGAACAGGAACATGCCAAGCAGCTTTCTTTGAAGCAGTCAGCAGAAATCAAGCGATTGAGTATGCATTCCGAAGGAAATGCTCAGCCAATAACAAGTACTTTTGACAGATTGCATGTGACATCTGTAGACATGTTGAAGTTTTTGGCTCGAGAGCAAATCAGACAAGGAAGTGGGGAAGGAGATATGAAGTCTCCTCCATCGGGAGGAGAGGAATCAGAAGCATCTGAGGCATCCAAAACTGGAGATGTAGCTCTCAATGGACAGGTTTTCATGGATGAAGGCGAGAATTCGGTACAGCCAAATTCCTCAGAACAAAATTCTCCAGAGGGATCTGTTCACCACTGTCAAGTTTGCAAGAAGACATTCTCCCGTTCCAGCCTACTTAAACAGCACTCAGTAATTCACATGGGGAACAAGCGCTTTAAATTCCGCTGTGAAGTGTGCAGCAAGATGTTTCGGACACGCAGCCACTTACGTGATCATACACGTATTCATACAGGTGAAAGGCCATTTAAGTGCCATATTTGTGAAAAAGCATTCAAGCAATCCAGTGATCTTAAGAAGCACATCAACCTTCACACTGGTGCAAATCAATTCAAGTGTGAGGAGTGCAACATGGAGTTTCGCAGAGCTGATGCACTTAGAAAGCACAAGTTGGGGCACAAGATGGGAAACATGCCTTGTGGGCACTGTGGAAAGAACTTCATGCACATCAGTGCATTAAGGCAGCACAGAGCTATGCACAATGTGCAGCCAGTGAAAACAAACAGAACCTTTCACAGATGCAACTACTGCTTCAAAACATTTACAAAAGCTGAAAGTTATAAGCTTCACATGGAAGAGCACATCAGAGAGCAGAGCATTACACTGTTTGACTGCAAAATCTGCTCCTTGAAATTCTTTAGCAAAGCAGAATTCACAGATCACATGAACATCCACAATGGCAAGAGACCATACAAGTGTTTCATCTGTGAAAAGGAATTCTGCATTGCTGAGCATTTGCAGGATCATGTCAGGCTTCATACGGATGTGCCAGCGAGAATCAGTAATAATAATAATAATTGTGAATGTTAGGGTCAAAAGATTGCAAGGTGCATAAGGCTTAGTAAGACAGCCAGTCATTCATGCATGAAAATTATTGCCTCTTTTAAACCCATTTAAAGGTTATATTATTAGCACTTGACTTACAGTGTCCTTTGTAaaaagaaacaaaaagaaaagaacataagagaCCAGCCCATCCCATCCTTTTGCAAGAAAAGGTTGTTGCAAAAAGGTGAGAGCAAACTACATTCATGAACAACACTTACTGAAGGTAGAACATGAAGATATGAACAAAACAATCTGTGTTTGAAATAATCTTGTGCAATGTTGTAGTGAAACTTGTAATTCTCAAAAAATGGTGTGATACTTTGTTCTGACCTTTGGAATAAaacatcatttaggtaacttttaaccctttcactcccgtaagtgctactgacatctagattttactctgccttacgccagacaattttactcatagacgggtaacccctcgggagtgaaagggttaGTTAAGTGTTAGTTGGTTGTGACACTCTAATTATTTTGTTTTTATTGGGTCATAAGCAATCAGTTCACATCTGATAACTCACTATTTTGCATTTGAACAGCTATTTTTGCAGAGGTGTAACACTCTTAGGTTGTCTTAGCTTCTTCAGAAGGTTGCAAACTATTCCTTTTCATTAGTGAAAGAGTTTTGGTCGTAAAATCATGTTTGTCACCTCATCCTTTAACTCTTAACTACTGGGTATTGCACTTGCATAATCTTTTTTTTTCTGATTTTACTTGTGAATTTGTGAAATTATTGAGACAATTTAATATCGAGAATATGAGCAATTTAGCCCTCACCATCACATGACGGAAGCAACTGTATTTTACTCAAATTTATTTAAGAATTAGGCATTACCCTTTTGAAAAGTTATGATGAATAACGTCATGAAAAATTAACAGTAAATATTACTTTCTACGATGACTATTACAGTGCAATTAAGTTTACATTGATTAAGGTAAAAATTAATGACTCCTTTTTTCTTGGGTGGTGTGTGATCATGTGTAAATTACCATTGGTGAATCAAGTTCTTATATTTATGATAGACAAAATTTTTATTATTGGTTGATATAGCAGTTAACAGCACTTCTCTTTTTGTGGACAAAAAATTGAAATGGAGGAAACAGCCCAAGGGAAATGTCAGATCGATTTTTAAGCTCTTGAAAGAATGCAAAATAGTAGTAATCTTAATTATAGTCAAAGTGTAGAGGTAAAAAGGTTGTATGAACAACCATGCAATGGAATTTTATCAAATTCTAACCACAGTATATTATTGCTTTGTTATCATAAGTCATGTGTGAATAGTGAAAATTTTGTTAAGAGGGTTATGCAGGCAATTCTTATTCCAGCTGGAACCTTGATTCAGTTTTGTTAACGAGCTAGATGCAGGCATCTGAGGCTCATATCAGAGTAGCAAGTTTCTTTTTAAATGGTTATATATTTCACTTGAATTGTTAGAGGTCAAGAAGGGTTACTTGTCATATGAAaaaaaaaaagaaaagaaagtaataaaatactatagcaataaataaaaataCTCTAGCAAAGTATCTTTTTTTGTAAATAAACAAATTTTTGACCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007066 (this species only)
Transcription factor family	zf-C2H2 · all TF in this species
Transcription factor family	zf-GAGA · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096 all species →	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050331 all species →	Family	Zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16515 all species →	PR DOMAIN ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of agem_s0002.g324.t1 across 48 RNA-seq samples of Acropora gemmifera. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

5TPM > 0

1Conditions

140.1Max TPM

5.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
branch tip	48	5	5.61	140.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR3169535	branch tip	branch tip	not recorded	not recorded	SRP062488	140.08
SRR3182775	branch tip	branch tip	not recorded	not recorded	SRP062488	73.34
SRR2169558	branch tip	branch tip	not recorded	not recorded	SRP062488	20.15
SRR3223317	branch tip	branch tip	not recorded	not recorded	SRP062488	18.65
SRR3223319	branch tip	branch tip	not recorded	not recorded	SRP062488	17.19
SRR3169421	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169422	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169423	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169425	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169426	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169518	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169527	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169528	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169529	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169530	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169531	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169532	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169533	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169534	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169536	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169537	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169538	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169539	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169540	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3169541	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182410	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182448	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182557	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182684	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182685	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182686	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182776	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182777	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182778	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182779	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182780	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182781	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182784	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182785	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182786	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182787	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182788	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182789	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182790	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182791	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182792	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182793	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00
SRR3182794	branch tip	branch tip	not recorded	not recorded	SRP062488	0.00

Source: CnidoSite RNA-seq expression matrices (AGEMM_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.