Gene detail

Detailed information of agem_s0003.g85.t1 in Acropora gemmifera

Genomic Location: sc0000003_pilon:1395982...1398399
NR annotation: XP_015774052.1, PREDICTED: homeobox protein SMOX-3-like [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
O42115	Aristaless-related homeobox protein OS=Danio rerio OX=7955 GN=arx PE=2 SV=1
Q90277	Visual system homeobox 1 OS=Carassius auratus OX=7957 GN=vsx1 PE=1 SV=1
O97670	Homeobox expressed in ES cells 1 (Fragment) OS=Oryctolagus cuniculus OX=9986 GN=HESX1 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan