Gene detail

Detailed information of agem_s0009.g34.t1 in Acropora gemmifera

Genomic Location: sc0000009_pilon:937616...940771
NR annotation: XP_015780571.1, PREDICTED: putative ankyrin repeat protein RF_0381 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

agem_s0009.g34.t1

ATGGCGATTGAACTCGTTTTGAATGATGGGATGGATGTCAATGTCGCTGAAAAGAGAAACGTCACACCTTTGGTTTGGGCGAGTCCAGCGGCCTCAAGTTTGTCAATCAAAACCCTGATTGATCTTGGTGCAGACGTAAATGCTCAAACATTCCAGGAGAGATTTTGTGGCTTCTCCAGTGGGACTGCACTTCGTTCTGCAATCCATGGCAACAATGCAAATGTCGTTAAAGTGTTACTTGCAAACAAGGCGGATGCTAATATTGCCGACCAACAAGGAAATACAGTTCTACATTCATCTACTTCCAAGCGATTTTTCAGcatttcccagctgctgatagactctggctgcaaaatcaaTgtgagaaacaacgtcggggaaacgccacttcattctactgttcgtggtaagaatgtagctgatgttaagcttttacttaggaacaacgccgatgcgaAtattgaggacaatcagggaaatactcctcttcatacatctacgcgtgagggattgtgcgacatttcacagttgttggtagactctggctgcaaagtcaatgtgggaaacaatgtcggaggaacgcctcttcattctagtgttcgtggtaagaatgtagccgatgttaagctgcttcttaaacacaacgccgatacgaacattgaggacaatttgggaaatacccctcttcatatatctacgcgtgagggattgtgcgacatttcacagttgttgatagactctggcagcaaaatcagtgtgagaagcaacgtcggggaaacgcctcttcattctgccgttcgtggtaagaatgtagatgatgttaagcttttacttaggaacaacgccgatgcgaatattgaggacaatcagggaaatactcctctccatatatctacgcgtgagggattgtgcgacatttcacagttgttgctagactctggctgtaaaatcaatgtgagaagcaacgtcggggaaacgcctcttcattctgctgttcatggtaaaaatgtagctgatgttaagcttttacttcggaacaacgccgatgcgaatattgaggacaatcagggaaatatcccacttcatatatctacgcgtgagggattgtgcgacatttcacagttgttgctagactctggctgcaaagtcaatgtgagaaacaaagtcggggaaacgcctcttcattctgctgttcgtggtaagaatgtagctgatgttaagcttttacttagcattaattccgatgcgaatattaaggaccataaggggaatacccctcttcatatatctacgcgtgagggattgtgcgacgtttcacagttgtttgtcgactctggctgcaaaatcaatgtgagaaacaacgttggggaaacgcctcttcattctgctgttcgtggtaagaatgtagctgatgttaagcttttacttggaaacaaagccgatgctaatattgaggacaatcagggaaataccccacttcatatatctacgcgtgagggattgtgcgacatttcacatatgttagtaggctctggatgcaaaataaatgtgagaaacaacgtcggagaaacgtctcttcattctgctgttcgtggtaagaatgtagctgatgttcagctttttctaaagaacaacgccgatgctaatttacaggacacatcaggaaatactcctcttcatatatcttcgcgtgatgggttttccatcatttcacagttgttgatagactctggctgcaacaaaaacctgaaaaaccgggaaggtaagAAGCCATTCGATCTTAAACCTTTTTCTTATTTTTCTCATTATCCTCCTTTTCCTGGTGATTCAGAGGAAGCTAAAGGAAATGAAGGATATACATATGCATCGCAGAGGGGTTTCCGACGTAAGCGTTTCGTTGAAAGTGAAGATAAAGGTGATCTGTGGATGAACAAACCGACTCGGTCTACTTTGTCTTCACCTTTCTTTGTCAAACAAAGGAGTGGTTCACTGTCAAAGAATCGACCCGAATTATCATCGGCCCTAAGGAACCGCCGGATGGGTTATGTCTCATCTCCAACTCTTTATGGTGCTTTAGAGGAAGATAAACAAGAGTTTCCGACATAA

Transcript

agem_s0009.g34.t1

GACCATAAAGCAAGACCAACGCTTCAACAACCACCCAGTCTAAGAACATTAGGAAGAAGGGCATTTACGCGCACAGACGAGCATTCAGGATTCAATCTACTCCAGGCAGCTGTCTTGGAAGGAGATTATGACACTGTCACCAAAGCAAGTGTTCATCTAGAGAACTTTTTGGAGGAGATAAATTGCCGAAAAACTGGTGAGAAGGCTTCCATTTTACCCGGAAAGTCAGCAGCTGATATTTTGTCAGTTAGAACTAGGACGATTTGGAGAACCAAAAGAAAGTTTGTTAAAGTGTCCACAGAATCCTTTGAGACTAAAAAAGCATTTCAAATATACACAGACTTCGTTGAGACTGAGAGAAAACTTACCAAGCTGCACTCATGCGCCAAGGGGAATGACGTAGAAATGGCGATTGAACTCGTTTTGAATGATGGGATGGATGTCAATGTCGCTGAAAAGAGAAACGTCACACCTTTGGTTTGGGCGAGTCCAGCGGCCTCAAGTTTGTCAATCAAAACCCTGATTGATCTTGGTGCAGACGTAAATGCTCAAACATTCCAGGAGAGATTTTGTGGCTTCTCCAGTGGGACTGCACTTCGTTCTGCAATCCATGGCAACAATGCAAATGTCGTTAAAGTGTTACTTGCAAACAAGGCGGATGCTAATATTGCCGACCAACAAGGAAATACAGTTCTACATTCATCTACTTCCAAGCGATTTTTCAGcatttcccagctgctgatagactctggctgcaaaatcaaTgtgagaaacaacgtcggggaaacgccacttcattctactgttcgtggtaagaatgtagctgatgttaagcttttacttaggaacaacgccgatgcgaAtattgaggacaatcagggaaatactcctcttcatacatctacgcgtgagggattgtgcgacatttcacagttgttggtagactctggctgcaaagtcaatgtgggaaacaatgtcggaggaacgcctcttcattctagtgttcgtggtaagaatgtagccgatgttaagctgcttcttaaacacaacgccgatacgaacattgaggacaatttgggaaatacccctcttcatatatctacgcgtgagggattgtgcgacatttcacagttgttgatagactctggcagcaaaatcagtgtgagaagcaacgtcggggaaacgcctcttcattctgccgttcgtggtaagaatgtagatgatgttaagcttttacttaggaacaacgccgatgcgaatattgaggacaatcagggaaatactcctctccatatatctacgcgtgagggattgtgcgacatttcacagttgttgctagactctggctgtaaaatcaatgtgagaagcaacgtcggggaaacgcctcttcattctgctgttcatggtaaaaatgtagctgatgttaagcttttacttcggaacaacgccgatgcgaatattgaggacaatcagggaaatatcccacttcatatatctacgcgtgagggattgtgcgacatttcacagttgttgctagactctggctgcaaagtcaatgtgagaaacaaagtcggggaaacgcctcttcattctgctgttcgtggtaagaatgtagctgatgttaagcttttacttagcattaattccgatgcgaatattaaggaccataaggggaatacccctcttcatatatctacgcgtgagggattgtgcgacgtttcacagttgtttgtcgactctggctgcaaaatcaatgtgagaaacaacgttggggaaacgcctcttcattctgctgttcgtggtaagaatgtagctgatgttaagcttttacttggaaacaaagccgatgctaatattgaggacaatcagggaaataccccacttcatatatctacgcgtgagggattgtgcgacatttcacatatgttagtaggctctggatgcaaaataaatgtgagaaacaacgtcggagaaacgtctcttcattctgctgttcgtggtaagaatgtagctgatgttcagctttttctaaagaacaacgccgatgctaatttacaggacacatcaggaaatactcctcttcatatatcttcgcgtgatgggttttccatcatttcacagttgttgatagactctggctgcaacaaaaacctgaaaaaccgggaaggtaagAAGCCATTCGATCTTAAACCTTTTTCTTATTTTTCTCATTATCCTCCTTTTCCTGGTGATTCAGAGGAAGCTAAAGGAAATGAAGGATATACATATGCATCGCAGAGGGGTTTCCGACGTAAGCGTTTCGTTGAAAGTGAAGATAAAGGTGATCTGTGGATGAACAAACCGACTCGGTCTACTTTGTCTTCACCTTTCTTTGTCAAACAAAGGAGTGGTTCACTGTCAAAGAATCGACCCGAATTATCATCGGCCCTAAGGAACCGCCGGATGGGTTATGTCTCATCTCCAACTCTTTATGGTGCTTTAGAGGAAGATAAACAAGAGTTTCCGACATAAAATTGTTGTTGAAAGTGAAGATGAAGATTAACCCAGAGACTGTATCTTCACCTATCGTTGGCAAAGGAAAAGAGCAAAGCTCGACGTGATGGGGTGGAGTCCTGCAGGAATTAGAGACGAAACgaggcaccgtggccgagcggttatgtcgctggacttaatctggggattgcgagtgtcgctctgaccactagttggattttagccaggtagtccctggtgcaactcctcggctgcacttgtatataaatttctagtttctaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR052771	Family	Neurotrophin-activated signaling adaptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24116	KINASE D-INTERACTING SUBSTRATE OF 220 KDA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019887	Molecular Function	protein kinase regulator activity	Interproscan
GO:0030165	Molecular Function	PDZ domain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15502	ANKRD28; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	-	DNA repair and recombination proteins	ko03400	deepkoala