Gene detail

Detailed information of agem_s0009.g67.t1 in Acropora gemmifera

Genomic Location: sc0000009_pilon:1687319...1689501
NR annotation: XP_015775521.1, PREDICTED: uncharacterized protein LOC107353686 isoform X7 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

agem_s0009.g67.t1

ATGAAGAAGATTGTCAAGAACATTGCGAAAAAGCTGGGGTACCGAGAAGCTCCCTTTACGCCTGACAGctttcaagaagcccttgacaagaacgaaaaacaattgaaaattgccagggaaacagacgaccgcgccggagaaggaaaagcctattacaatcttggggtcgcttacgaatcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatccagggaagctggcgaccgggccaaagaaggaggtgtctatttcagccttgggtatgcttacgaatcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaaaatacacaggcaaccaggcgaccgggatagagaaggagatgtctacttcaatcttgggaatgcttacgactcccatgatgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatccaggaaagcaggcgaccgatctagagaaggagatgtgtatctaaatcttgggatcgcttacaattcccacggtgatttcccaaaagctattgagtgttatgaaaagagtttgaacatatccaggcaagcaggcgaccgggctagagaaggaggtgtttatttctgtcttgggtatgcttacgactcccacggcgacttcccaacagctatcgagtgttatgaaaagagtttgaacatatacaggcaagcaggcgaccgggatagggaaggaggtgtttatttcagtcttgggtatgcttacgacttccacggcaatttcccaaaagctatcgagtgttatgaaacgagtttgaacatatacaggcaagcaggcgaccgggcgagagaaggagatgtctatttcaatcttgggagtgcttacgagtcccacgacgatttcccaaaagctatcgagtgttatgaaaagagtttggacatatccagacaagaaggcgacccaactagagaaggagatgtctatctaaatcttgggatcgcttacgactcccacggcgatttcccaaaagctattgagtgttatggaaacagtttgaacatattcaggcaagcaggcaaccggggtaaagaaggagaatcctattacaatcttgggatcgcttacaactcctacggcgatttcccaaaagctatcgagtgttttgaaaagactttgaacatatacaggcaagcaggagaccgggaccgtgaaggaaaagcctatgaaaatcttgggatcgcttacaaatcccacggagattttgcaaaagccatcgagtgttttaaaaagagtttgaacatatacaggaaagcaggagaccgggatggagaaggaaatgtctattacaatcttgggaatgcttacaactcccacggcgatttcccaaaagctatcgagtgttatgaaaagagttcgaacatatacaggcaatcaggagaccgtgatggacaaggagatgtctatttcaatcttgggatcgcttaccaatcccagggcgatttcccaaaggctatccagtgttatgaaaagagtttgaacatatacaggcaatcaggagaccgtgatggacaaggagatgcctatttcaatcttgggatcgcttaccaatccaagagcgatttcccaaaggctatccagtgttatgaaaagagtttgaaaatttcccgagaagcaggtaaccgggttacagaaaaaagggcctgtcttaaacttgaagacgcttacctatcccgcagggattttccaaaggctatcgagtgttacagagagagtttgaacattgccagagaagcaggttctcggagtggagtatcttggcctttggcagttggcgatgtttcaaaagctcctgaatatcaagaaaggcatttaaaaattgtcagagaagtgggtggtcTTACTGAGGAGGTAGCAGAGGCAGGACCTTACAATATCCACGGTAATTTTTACCACCCTTTTGTCAATTCCGAAAGCAACTAA

Transcript

agem_s0009.g67.t1

GTTAAATATATATTTGGAAAACCATTTCACATTAATGAAGAAGATTGTCAAGAACATTGCGAAAAAGCTGGGGTACCGAGAAGCTCCCTTTACGCCTGACAGctttcaagaagcccttgacaagaacgaaaaacaattgaaaattgccagggaaacagacgaccgcgccggagaaggaaaagcctattacaatcttggggtcgcttacgaatcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatccagggaagctggcgaccgggccaaagaaggaggtgtctatttcagccttgggtatgcttacgaatcccacggcgatttcccaaaagctatcgagtgttatgaaaagagtttgaaaatacacaggcaaccaggcgaccgggatagagaaggagatgtctacttcaatcttgggaatgcttacgactcccatgatgatttcccaaaagctatcgagtgttatgaaaagagtttgaacatatccaggaaagcaggcgaccgatctagagaaggagatgtgtatctaaatcttgggatcgcttacaattcccacggtgatttcccaaaagctattgagtgttatgaaaagagtttgaacatatccaggcaagcaggcgaccgggctagagaaggaggtgtttatttctgtcttgggtatgcttacgactcccacggcgacttcccaacagctatcgagtgttatgaaaagagtttgaacatatacaggcaagcaggcgaccgggatagggaaggaggtgtttatttcagtcttgggtatgcttacgacttccacggcaatttcccaaaagctatcgagtgttatgaaacgagtttgaacatatacaggcaagcaggcgaccgggcgagagaaggagatgtctatttcaatcttgggagtgcttacgagtcccacgacgatttcccaaaagctatcgagtgttatgaaaagagtttggacatatccagacaagaaggcgacccaactagagaaggagatgtctatctaaatcttgggatcgcttacgactcccacggcgatttcccaaaagctattgagtgttatggaaacagtttgaacatattcaggcaagcaggcaaccggggtaaagaaggagaatcctattacaatcttgggatcgcttacaactcctacggcgatttcccaaaagctatcgagtgttttgaaaagactttgaacatatacaggcaagcaggagaccgggaccgtgaaggaaaagcctatgaaaatcttgggatcgcttacaaatcccacggagattttgcaaaagccatcgagtgttttaaaaagagtttgaacatatacaggaaagcaggagaccgggatggagaaggaaatgtctattacaatcttgggaatgcttacaactcccacggcgatttcccaaaagctatcgagtgttatgaaaagagttcgaacatatacaggcaatcaggagaccgtgatggacaaggagatgtctatttcaatcttgggatcgcttaccaatcccagggcgatttcccaaaggctatccagtgttatgaaaagagtttgaacatatacaggcaatcaggagaccgtgatggacaaggagatgcctatttcaatcttgggatcgcttaccaatccaagagcgatttcccaaaggctatccagtgttatgaaaagagtttgaaaatttcccgagaagcaggtaaccgggttacagaaaaaagggcctgtcttaaacttgaagacgcttacctatcccgcagggattttccaaaggctatcgagtgttacagagagagtttgaacattgccagagaagcaggttctcggagtggagtatcttggcctttggcagttggcgatgtttcaaaagctcctgaatatcaagaaaggcatttaaaaattgtcagagaagtgggtggtcTTACTGAGGAGGTAGCAGAGGCAGGACCTTACAATATCCACGGTAATTTTTACCACCCTTTTGTCAATTCCGAAAGCAACTAACTCACCTGCTATTACATCATTTACTTTTTCCTTGACTCGCTCAAAAGTCTGCTATTCATTCTAATGCGAAAATGTGTATTTGTCTGCTATATACCAAGCGAACGAAAAACACTTCAAAGCGTTAACTCGGCGTCAAGAGCAATAAATGAAAGCTGGCTGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR051476	Family	Bacterial Response Regulator Aspartate Phosphatase	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR006597	Repeat	Sel1-like repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46630	TETRATRICOPEPTIDE REPEAT PROTEIN 29	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003341	Biological Process	cilium movement	Interproscan
GO:0005929	Cellular Component	cilium	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07126	K07126; uncharacterized protein	-	Function unknown	-	deepkoala