Gene detail

Detailed information of agem_s0011.g14.t1 in Acropora gemmifera

Genomic Location: sc0000011_pilon:167708...180235
NR annotation: XP_044176328.1, uncharacterized protein LOC114957958 isoform X1 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0011.g14.t1

CATAGCCATTTTTCCCTTGAATCCGTTGCTTCAAATACagaaggagaagaagagaaagacaaagaaacagCCCTTTGCACCATATGAATACTATGAAACATGGACGCAAGTACATTGAATCTCCCTGCTTGCTCCTGACAGTTCAAGAGAACTACGCTCGAATCGAAGTTGTCATTTCGTTGTTTATGGTTGTGGGAAATGGGCCTGGATAACACTGTCAAACATTGCAAACTGAATTACTATCTATATATCTTGAAGGTTATTGCCTTCCTTTTTATGCTTTTTGGTTTTCACCTTGAGGCTGCAGATCCTGCGAGAAAATTATGCCTTGATAATCAATTCATCGTCGATCATCCAGATGGTAGTACAACGTGTGAAGATTGTGGACCATGTCCCGTAGGGCAACAACATTCACACGTGTGTGGAGGACACATATATGCTAATGCAAGTGTAGTGTGTGAACGTTGCCCTGAAAACACGTTCTCCAGTCATGAAGACACATCTAGATGTACTCCCTGTTCATCTTGTGCAGAAGGCCAGGTTGTTCTTCAAAGGTGTACAGCAACACAAGATGTCGTATGTGACAATAAGTGTTCTAGTCCTGACAGATACTTTGATGAAAGTGGTGTCTGTTTACCTTGCTCAAAGTGTTGTGGTGATGGTAGAGATAAGGTGGAGAATGAATGCAAATTCAAGTTGGGAGGAGCACTGGAAAATGCATGTGCCTTTAACCAGAGCGGTAATCACTGTGATATAAGTACAAGTAACCCAACTACAGCAACTTCAAACTCAAGAGAAATGACAGGCGATGCCACTTCAACCCTGAATGTCACCAGCTTAACAACTCTGCCTCTTGCATCCGGAGACTTGTTTCCAAGCACCTCTGTACCCGGAAGATCTACAAGTGGACTTACTCCTGAAAGAATCGTTATCATCGTTTTTGTTGTGTTCTTGTCTATCTTCTTTGTGACTCTTTTTGTAAAAGCAAGGGGGAATTGTAATCATTTGCATGGAGGTAACAGTGATGTAGAGATTGGACAACCTAAAACAGGTGAGGACATGTGTGGGATGGAAATTATGAGCAGCACAGCTGTGGCTGAAACAGGGGAGGCAGTTGGTTCCAGAAAGGACACTGCGTGGGTGGAAGACGAAGAGGAAAAGAAGGGATCAAAAGAACCTTTGTTAGGAAAGCTGGAGCCAGTCCAGAGAGCACGTGCTGAAGAAAGGCTTAATAAGGCCAGCAAAGAATTCGTGGGTGCAGAGGGAGGACGAACATCGGGTCTTTTGGATGAAGGATTGGATCAAGAAGAAAATGGCGTTGGTGAGAGAGAAGAAAGCAAGGGAGAACAAGAAGAAGATGATCAACAGCAGGAGCACGGAAAACTATTGCAGGGTGCATATTGCTCTTGTCAGAAAGAAAAAAAGGCAGAGAAAGtgtccaagcctttagcagatctttataacgattcctcagatatcctgaagaaagtctgcgaaagtctggataatcctattccaggacttggtagtgtcgaagacgtagctaaactttaccggttcgatgtcgtcacagtacgatctagatttcaaacatctccagatggtccgtccgatgctctgatttcagccattatagctcaattccctgatgaaaccgttgagagctttgcaagagtggtcgtaaagcaaacgagacgacagaacgttgccaaattgctgagggagttcGATCGCAAATGAAAGAATATATCTTGGTGAATTTCTTTGATGATATAATGTGATGTTAGTCTTCAATTTACGTATTACGAAAACGCAATAAATTTCTTGATTTTACTGATAACATTTACCTAGCTAGACCGTGATACACTTGGTTTTCATAATTTCTATTGTGTATTAGTTTTAATCGAGGTAGAACTGCTAAGAAAGCACCTTTAAGTCACATTTATGAAGGAAAGAAATGAGTGATATTTTGTAAGGCGTAATTTTTGTGGCCATTATTTTTTATGTTCATTTTCGTTACTATGTTGCCATCAAATTCGTTGATAAAACCTTTTCACGCAATTGTTTTCAGTATCTTTTTTGAGAAAAATATAAGTTATCTTGTTATATGAGTTATCGTTTTTTAGAAAAAAGCATTTGAAATGTGTTTATTTTTTGTTGTGCAGATTGAATATTCCGCCATTTCATGGTTCTTATAATAAGCTAAAAGTAGAATTCCTTGTGGCTTAATTGGTAGGTAAAACGACGTGTAATTTTCTTATTTTCATTTGGTTACATTTAGTTTGACTAGGGAACGAAGGCCGTAAAGTTGGCAGGAAAAAACAGATTTTCCTGTTTTAGAAGATCCTTTTTGTGCAGTGATTCATAGTTGAAAGTCAAAATCAGGAATGTAGTTGGTGTTGAACTAAGCGGGGATTCTAACTGGTTCACAAGCTGGCGCCAGTTCTTTTTCCGACCAATGGAGAGTGTGAGCATTTTGATCAGCAATTACGGCTGCGGCAAAAGAGCAATACTATTTGTTAATTTGTGCAAAAGCGGCATTTAACAGGTATTTTGCATCCAATAAAACAGCAACTAGTTGAAGGTACCTGACGAATTACGAAATTTCGACGACGACACAAAATAACTCATTCGTTGTCTTTCTGACTTGAAAAATGCTTGCTCTATTACAGTTTAAGGATTCTTTGTGCATGCGAGATGGTATGATAGGGAATTTACTCGAGAGTGCTCCAAGCCACATTTTGAAATTTCATACTACGTTGCTTTGCCGTAGCCGTCTTCGTTGTGATAAATTCTCCCGTGAAGCAGGTGTTAGACTTTCCCTTTTTTCACTAAAGAAGTTGTTAGATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR047526	Family	Tumor necrosis factor receptor superfamily member 19/27/EDAR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12120	TNFR-CYS DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0043123	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0046330	Biological Process	positive regulation of JNK cascade	Interproscan