Gene detail

Detailed information of agem_s0014.g55.t1 in Acropora gemmifera

Genomic Location: sc0000014_pilon:1122342...1128716
NR annotation: XP_029197802.2, U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0014.g55.t1

AGCTACCGTTTCAACATGGCGGACGAATCGAAGATTTGTAATAAATATTTTTGAGACTCGTTATTAGAATAATGGAATCAACAACTGATAAAGTGGCGAAGGTTGACGTTGGCTACGAAATTCCAACTTGGAGCAATTGGTCACCTTTGGCCAAATTCTACCATCCGCTTCAAGCTGGCAGCATTGATGGTACTGACACAGCGCCTCACGATAGAGCTGTTGTGCGTGCCATGTTGGCAAAGTATAAACCGAACAAGAGAGTCACTGGAGATCCAGATAAGACGCTGTTTGTTGGGAAGCTCAGCAAGGATACCTGTGAAGAGACTTTGTTTAAATTGTTTGGAAAATATGGGGAATTAGTGAAATGCAGACTGGTCAGAGATGTTGTGGCAGGATTTTCAAGAGGCTATGCATTTGTTGAGTACAAAAGTGAAAGAGATGCTAACAAAGCCTGGAGGGACCTGCATAATGAAACAATTGATGGTTGCACTATACTTGTAGAGTATGAAGCAGCTAGAACCTTGCAGGGTTGGGTTCCAAGGCGACTAGGTGGTGGCTTTGGAGGCAAAAAAGAATCAGGACAATTGAGGTTTGGAGGAAGAGATCGACCTTTTAGAAGACCAATACCCAGCGAACAGGATCGAATGCAACACAATAGCTATTCACGTGGCTCGCGTGATCACGAGAGTTCCCGCGAGAATTACAGTCATCGCGATCATGAACGCGACAAACGGGAACGTGAATGGGGGATCAAGCGAAGTAGTTCTCATTATCATGATCGTGATGGTGATGCGAAAAGATATCGAGGACGTGACAGTGAAAAGTCACGTTCTAGTGACCGATCGCATCATGAATACGAAAGATCGCGTGATCGTGGTGGAGAGCGCTACAAAGAGCGCGGGCGTCACGGGGAATCTCGTCATCGAGAGAGAGATGGGTATCGAGACAAAGGAAGAGACACTTACGAGACAAATGAAAATTCAAAAGACGTTTATAATAAATACAGCCAAAAGGACACCGGGATGAGCTAGCAGCTGATCTGTGTGTGGAATACAGTGAGCTGGCGTGGCAGGAGTTCTCACTCTATCAGCTAAACGTTTGCTCTCGGTAAATGTTTCTGGGAGCTGTTTTCGTCACAAGCAAAGGAGATATGATGAGATAAGGAGAACGGAGATCCTTCGCGACGTCCTTCAGGACAAAGAGTTGTCGTTTCTTTCTGTTGATGCATGTCTTGAAGAATAGTGGAGCCGTAGTCTACTTGTTAAAAAAAAAAAAACAAGAAACAAACAGGTTTCTCATTAGTAGGTTTTCAACGCTAAGACGATCCATGTACGTTTCCTTCAATTGTTGCATGTGACTGGCTCGTTGTTTGGTTAATAGTTGGCGTTTCTTCACTTCGAAGAATTCTTAAACCCTGGCAGAACAAGACTTAAAGTCGACGACAATTGGAAACTCACACCCTCGTCTAGCCAGTAACTCTCGTGGACTCCCGGCTACTCGTGTGGACTCCCGAGAACTCTCGATCATTCGTCGAGGTTAACCAGCTCACTTTTTCAGTGAGAGTTGGTGAGAACCTTTTTCCACTCTCGTCCTCGTATGGCCATACTCTCAATCCCACTCATTCGCTTTCAGAAGTCTTGACAATTTGTTTCAAAAGAGTTGACAAATCTTGGGTTTGGGTTATACCTGTACACATTTTTAGTAGCGCATTTAGCCAATAATCTGTCTGTAGAATCAGAACTGGATGGGATAATAATTCCAAACTTTCTCATAATCGTGCTGAAAACTTCACTAAAAGGAGAAAACGTTGCTGGTTATATACTTGACTGCTAAGTGACTTTCAAAGATTTCCTCTCTTCTAAAGGTATCGTTGCAGGATGGAGTTTAGTGATCGCTTCTTCAGTCAAAGTGATAATTACGTAGCGGGAGGGCGTTTCTCGAAAACGATAGATTGATGAAATTGAATAGCGAAATTAAAAAATCGGTAAGAAACTATGCTACCATGCTTTCTTTGAAATCATATTTGTCTCTTAATTTGATTTTGTTGTTTCCTATTCCATGTTATTCATAATTTTTACTTTCATATGGACTTGTTTGTACAGATTACATATTTTTAACAAACACAGCCGTTGGTTGCCACGATGAAGCATCTGAGCTTGTTAGTTTGTTATCGGATTCCTCGAGTTGACTTGGAGAAACAAACACTTTTTGATTACATACCAACCTACGACAACCATGAGAAAACTGAATGTTACAACTTTTTTGCTGGATTCGAAAATAAAATACGAGGGAGTTG

Protein

Uniprot

Uniprot term	Description
Q5U1W5	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Rattus norvegicus OX=10116 GN=Snrnp35 PE=2 SV=1
Q9D384	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Mus musculus OX=10090 GN=Snrnp35 PE=2 SV=1
Q1LZH0	U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Bos taurus OX=9913 GN=SNRNP35 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR051183	Family	U1 snRNP 70 kDa and U11/U12 snRNP 35 kDa	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005689	Cellular Component	U12-type spliceosomal complex	Interproscan
GO:0017069	Molecular Function	snRNA binding	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13155	SNRNP35; U11/U12 small nuclear ribonucleoprotein 35 kDa protein	-	Spliceosome	ko03041	deepkoala