Detailed information of agem_s0014.g64.t2 in Acropora gemmifera

Genomic Location: sc0000014_pilon:1279679...1301456
NR annotation: XP_029192563.2, laminin subunit gamma-2-like isoform X2 [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A4D0S4Laminin subunit beta-4 OS=Homo sapiens OX=9606 GN=LAMB4 PE=1 SV=1
P11046Laminin subunit beta-1 OS=Drosophila melanogaster OX=7227 GN=LanB1 PE=1 SV=4
P07942Laminin subunit beta-1 OS=Homo sapiens OX=9606 GN=LAMB1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001807 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00055
all species →		Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF00052
all species →		Laminin_BLaminin B (Domain IV)DomainInterproscan
PF00053
all species →		Laminin_EGFLaminin EGF domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002049
all species →		DomainLaminin-type EGF domainInterproscan
IPR008211
all species →		DomainLaminin, N-terminalInterproscan
IPR013015
all species →		DomainLaminin IV type BInterproscan
IPR000742
all species →		DomainEGF-like domainInterproscan
IPR000034
all species →		DomainLaminin IVInterproscan
IPR050440
all species →		FamilyLaminin/Netrin Extracellular MatrixInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574
all species →		NETRIN/LAMININ-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005604
all species →		Cellular Componentbasement membraneInterproscan
GO:0008045
all species →		Biological Processmotor neuron axon guidanceInterproscan
GO:0009887
all species →		Biological Processanimal organ morphogenesisInterproscan
GO:0009888
all species →		Biological Processtissue developmentInterproscan
GO:0016358
all species →		Biological Processdendrite developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for agem_s0014.g64.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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