Detailed information of agem_s0017.g33.t2 in Acropora gemmifera

Genomic Location: sc0000017_pilon:388217...415515
NR annotation: XP_044185266.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114956613 [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7TN88Polycystin-1-like protein 2 OS=Mus musculus OX=10090 GN=Pkd1l2 PE=2 SV=1
Q7Z442Polycystin-1-like protein 2 OS=Homo sapiens OX=9606 GN=PKD1L2 PE=1 SV=5
Q7Z443Polycystin-1-like protein 3 OS=Homo sapiens OX=9606 GN=PKD1L3 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000040 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02010
all species →		REJREJ domainFamilyInterproscan
PF01477
all species →		PLATPLAT/LH2 domainDomainInterproscan
PF00754
all species →		F5_F8_type_CF5/8 type C domainDomainInterproscan
PF01825
all species →		GPSGPCR proteolysis site, GPS, motif MotifInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001024
all species →		DomainPLAT/LH2 domainInterproscan
IPR000421
all species →		DomainCoagulation factor 5/8 C-terminal domainInterproscan
IPR002859
all species →		DomainPKD/REJ-like domainInterproscan
IPR051223
all species →		FamilyPolycystinInterproscan
IPR036392
all species →		Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR008979
all species →		Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR046338
all species →		Homologous_superfamilyGAIN domain superfamilyInterproscan
IPR000203
all species →		Conserved_siteGPS motifInterproscan
IPR014010
all species →		DomainREJ domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10877
all species →		POLYCYSTIN FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005262
all species →		Molecular Functioncalcium channel activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0050982
all species →		Biological Processdetection of mechanical stimulusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for agem_s0017.g33.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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