Detailed information of agem_s0027.g90.t1 in Acropora gemmifera

Genomic Location: sc0000027_pilon:1248465...1280134
NR annotation: XP_029207698.2, vacuolar protein sorting-associated protein 41 homolog isoform X2 [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot Gene family
Uniprot termDescription
E7F590Vacuolar protein sorting-associated protein 41 homolog OS=Danio rerio OX=7955 GN=vps41 PE=1 SV=1
P49754Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens OX=9606 GN=VPS41 PE=1 SV=3
Q5KU39Vacuolar protein sorting-associated protein 41 homolog OS=Mus musculus OX=10090 GN=Vps41 PE=1 SV=1
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00637ClathrinRegion in Clathrin and VPSRepeatInterproscan
PF10367Vps39_2Vacuolar sorting protein 39 domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR000547RepeatClathrin, heavy chain/VPS, 7-fold repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR045111FamilyVacuolar protein sorting-associated protein Vps41/Vps8Interproscan
IPR001680RepeatWD40 repeatInterproscan
IPR016902FamilyVacuolar protein sorting-associated protein 41Interproscan
IPR019453DomainVacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2Interproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12616VACUOLAR PROTEIN SORTING VPS41Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0005770Cellular Componentlate endosomeInterproscan
GO:0006623Biological Processprotein targeting to vacuoleInterproscan
GO:0009267Biological Processcellular response to starvationInterproscan
GO:0016236Biological ProcessmacroautophagyInterproscan
GO:0030897Cellular ComponentHOPS complexInterproscan
GO:0034058Biological Processendosomal vesicle fusionInterproscan
GO:0046907Biological Processintracellular transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20184VPS41; vacuolar protein sorting-associated protein 41-Membrane traffickingko04131deepkoala

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