Detailed information of agem_s0029.g78.t3 in Acropora gemmifera

Genomic Location: sc0000029_pilon:1127897...1146206
NR annotation: XP_029180998.2, transcription elongation factor SPT5-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5ZI08Transcription elongation factor SPT5 OS=Gallus gallus OX=9031 GN=SUPT5H PE=2 SV=1
O00267Transcription elongation factor SPT5 OS=Homo sapiens OX=9606 GN=SUPT5H PE=1 SV=1
Q5R405Transcription elongation factor SPT5 OS=Pongo abelii OX=9601 GN=SUPT5H PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03439Spt5-NGNEarly transcription elongation factor of RNA pol II, NGN sectionFamilyInterproscan
PF11942Spt5_NSpt5 transcription elongation factor, acidic N-terminalDomainInterproscan
PF00467KOWKOW motifFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR014722Homologous_superfamilyLarge ribosomal subunit protein uL2, domain 2Interproscan
IPR024945DomainSpt5 C-terminal domainInterproscan
IPR005100DomainNGN domainInterproscan
IPR041973DomainSpt5, KOW domain repeat 1Interproscan
IPR005824DomainKOWInterproscan
IPR041975DomainSpt5, KOW domain repeat 2Interproscan
IPR041980DomainSpt5, KOW domain repeat 6Interproscan
IPR039385DomainNGN domain, eukaryoticInterproscan
IPR022581DomainSpt5 transcription elongation factor, N-terminalInterproscan
IPR008991Homologous_superfamilyTranslation protein SH3-like domain superfamilyInterproscan
IPR017071FamilyTranscription elongation factor Spt5, eukaryoteInterproscan
IPR039659FamilyTranscription elongation factor SPT5Interproscan
IPR041978DomainSpt5, KOW domain repeat 5Interproscan
IPR041977DomainSpt5, KOW domain repeat 4Interproscan
IPR036735Homologous_superfamilyNusG, N-terminal domain superfamilyInterproscan
IPR041976DomainSpt5, KOW domain repeat 3Interproscan
IPR006645DomainNusG-like, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11125SUPPRESSOR OF TY 5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0032784Biological Processregulation of DNA-templated transcription elongationInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0006368Biological Processtranscription elongation by RNA polymerase IIInterproscan
GO:0032044Cellular ComponentDSIF complexInterproscan
GO:0006354Biological ProcessDNA-templated transcription elongationInterproscan
GO:0140673Biological Processtranscription elongation-coupled chromatin remodelingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K15172SUPT5H, SPT5; transcription elongation factor SPT5-Messenger RNA biogenesisko03019deepkoala

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