Gene detail

Detailed information of agem_s0029.g87.t1 in Acropora gemmifera

Genomic Location: sc0000029_pilon:1239077...1258708
NR annotation: XP_044174963.1, contactin-associated protein-like 2 [Acropora millepora]

Gene Structure

More details in Jbrowse

Sequence

CDS

agem_s0029.g87.t1

ATGTCGCATGTTACTTTCACAATTTGGCCGTTTTTTGTACCCCTATTAGTTTCTGCACATGCCTGGTTGCAAAGCGCTCTTTTTCATCATCGATTCGATATTTTTTCGTATGGAAATTTCACCCAAGATGCCGAACGTCAATTGGCGGTTACTAAACTTAAGTCATTTGTAGTTGACGGCCCAGTGAATTGTGTATTCAGATGCATTGGCGAACCACAGTGTCTTTCGTTCAACTTGGCGGCTCATCCTGACTCAAACGGTTTCTATCAGTGTGACTTGTTAGCTTCTGACAAATACAGGGCAGCAGCGAAGGACTTTCAAGCCAACGATGCCTTCCATCATTACAGCCCATGGTCTCTATGCCGACAAACTCCTTGCCAAAATAGCGGTACCTGTATTCCAAGCTATGAGCTGAACTCTTATCACTGTATTTGTGCTCCTGGATTTGCTGCCTTTCATTGTGAACGTAAAGGGCATCTAACAGTTGCTGTTGATGCTTGGATGCAAAGTTCACTTTTTCGTCACCAATTCGGAATTTTGTCATTTGGAAGTTTCACTCAAGATGCCAACCATCAATTGGTGGCTACTAAGTTAAAGTCATTTGTACTTAAAGGTCCGATAGATTGTACATTCAAGTGCATTGAAGAAGTACAGTGTCTTTCGTTCAACTTGGCGGCTCATCCTGATTCAGACGGTCTCTATCAGTGTGACTTGTTAGCTACTGACAAATTCAGGGCAACATCAGAGGCCTTCCAAGGGAGCGTTACCTTCCACCATTACAGTCCATGGTCTCCATGCCAACAATACCATTGTCAGAATAATGGCACCTGTATCCCAGACTATGGGCTGAATGCCTTTCGCTGTGTTTGTGAGCCTGGATTTGCTGCCTCTCACTGTGAACGCAAAGTTATTTTACATAGCAAAGCTGACCGGAATCCTTTTCTAGGAAAATCCTGCAGTGAAATAAAATATTACAGTCCACAGGCCACAAGTGGCTCTTATGTCATCGATCCCGATGACGAGGGAAGCCACAAACCGTTCACTGTATTTTGTGACATGACTGACAAGAATGGAGTTGGTGTGACAATCATCAGTCACGACAGTGAAGCGAGAGGGCACGTGACAGGGCATGAGTCAAGTGGAAGTTATGTTTGCAGCGTCCATTACATAGCAACAGGCCTAACTGATGTTCCACAATTGGCTTCTCTCACGGATGTGTCCACTCATTGCGAGCAGTTTATCAAGTACGAGTGCCGTGGTGCCCTTCTTTTTAAAGGCGACACTGCGTGGTGGGTGTCAAGAACTGGAGCCAAAATGACCTACTGGGGAGGGGCCACACCCGCTGATCACAACAAATGCGCATGCGGCGTTTCATCACCCAACTCCTGCGCAGACCCGGCTTTTGGATGTAACTGCGAGAAAAACGATGGCACGTGGCGTGAGGACAGCGGTCTTCTAACAGAAAAGTCCCACCTTCCCGTGATACAGATGAAATTTGGAGATACCGGCGCAAGCAGTGAAGAAGGTTACCACACGCTTGGAAAGTTAAAGTGTTACGGCATGTCTCTATGCCGACAAACTCCTTGCCAAAATAGCGGTACCTGTATTCCAAGCTATGAGCTGAACTCTTATCACTGTATTTGTGCGCCTGGATTTGCTGCCTTTCATTGTGAACGTAAAGGAAAATCCTGCAGTGAAATCAAACATCACAGTCCACAGGCTAAAAGTGGCTCTTATGTCATCGATCCCGATGAAGAGGGAAGCCATGGACCGTTCACTGTATTTTGTGATATGACTGACAAGAATGGAGTTGGCGTGACAATCATCAGTCACGACAGTGAGGCGAGAACGCGCGTGAAAGGCTATGAGGCAAGTGGGAGTTATGTTCGCAACGTCCATTACACAGCAACAGGCCTAACTGGTGTTTCACAAATGGCTTTCCTCGCGGACGTGTCCACTCATTGCGAGCAGTTTATCAAGTACGAGTGTCGTGGTACCGCCATTTTTCGCTACAACACTGGCTGGTGGGTGTCAAGAACTGGAGCCAAAATGACCTACTGGGGAGGAGCCACACCAGCTGACCACAACAAATGCGCATGCGGCGTTACGTCACCCAACTCCTGCGCAAGCACGGCTTATGGGTGTAATTGCGATAAAAACGACGGCACGTTTCGTGAGGACAGCGGTCTCCTCAAAAGAAAGTCCCAGCTTCCAGTGATACAGTTGAGATTCGGAGACACCGGCCATAGTGGTGAGGAAGGTTTCCACACGCTTGGAAAGTTGAAGTGTTACGGCATGGAACTGGAATAG

Transcript

agem_s0029.g87.t1

GGACTTTGCCAAGAAGAAACGTTTTGCTTGGCACTGAGGAAACTTGATAAGGAAGGCCGAAAATGTCGCATGTTACTTTCACAATTTGGCCGTTTTTTGTACCCCTATTAGTTTCTGCACATGCCTGGTTGCAAAGCGCTCTTTTTCATCATCGATTCGATATTTTTTCGTATGGAAATTTCACCCAAGATGCCGAACGTCAATTGGCGGTTACTAAACTTAAGTCATTTGTAGTTGACGGCCCAGTGAATTGTGTATTCAGATGCATTGGCGAACCACAGTGTCTTTCGTTCAACTTGGCGGCTCATCCTGACTCAAACGGTTTCTATCAGTGTGACTTGTTAGCTTCTGACAAATACAGGGCAGCAGCGAAGGACTTTCAAGCCAACGATGCCTTCCATCATTACAGCCCATGGTCTCTATGCCGACAAACTCCTTGCCAAAATAGCGGTACCTGTATTCCAAGCTATGAGCTGAACTCTTATCACTGTATTTGTGCTCCTGGATTTGCTGCCTTTCATTGTGAACGTAAAGGGCATCTAACAGTTGCTGTTGATGCTTGGATGCAAAGTTCACTTTTTCGTCACCAATTCGGAATTTTGTCATTTGGAAGTTTCACTCAAGATGCCAACCATCAATTGGTGGCTACTAAGTTAAAGTCATTTGTACTTAAAGGTCCGATAGATTGTACATTCAAGTGCATTGAAGAAGTACAGTGTCTTTCGTTCAACTTGGCGGCTCATCCTGATTCAGACGGTCTCTATCAGTGTGACTTGTTAGCTACTGACAAATTCAGGGCAACATCAGAGGCCTTCCAAGGGAGCGTTACCTTCCACCATTACAGTCCATGGTCTCCATGCCAACAATACCATTGTCAGAATAATGGCACCTGTATCCCAGACTATGGGCTGAATGCCTTTCGCTGTGTTTGTGAGCCTGGATTTGCTGCCTCTCACTGTGAACGCAAAGTTATTTTACATAGCAAAGCTGACCGGAATCCTTTTCTAGGAAAATCCTGCAGTGAAATAAAATATTACAGTCCACAGGCCACAAGTGGCTCTTATGTCATCGATCCCGATGACGAGGGAAGCCACAAACCGTTCACTGTATTTTGTGACATGACTGACAAGAATGGAGTTGGTGTGACAATCATCAGTCACGACAGTGAAGCGAGAGGGCACGTGACAGGGCATGAGTCAAGTGGAAGTTATGTTTGCAGCGTCCATTACATAGCAACAGGCCTAACTGATGTTCCACAATTGGCTTCTCTCACGGATGTGTCCACTCATTGCGAGCAGTTTATCAAGTACGAGTGCCGTGGTGCCCTTCTTTTTAAAGGCGACACTGCGTGGTGGGTGTCAAGAACTGGAGCCAAAATGACCTACTGGGGAGGGGCCACACCCGCTGATCACAACAAATGCGCATGCGGCGTTTCATCACCCAACTCCTGCGCAGACCCGGCTTTTGGATGTAACTGCGAGAAAAACGATGGCACGTGGCGTGAGGACAGCGGTCTTCTAACAGAAAAGTCCCACCTTCCCGTGATACAGATGAAATTTGGAGATACCGGCGCAAGCAGTGAAGAAGGTTACCACACGCTTGGAAAGTTAAAGTGTTACGGCATGTCTCTATGCCGACAAACTCCTTGCCAAAATAGCGGTACCTGTATTCCAAGCTATGAGCTGAACTCTTATCACTGTATTTGTGCGCCTGGATTTGCTGCCTTTCATTGTGAACGTAAAGGAAAATCCTGCAGTGAAATCAAACATCACAGTCCACAGGCTAAAAGTGGCTCTTATGTCATCGATCCCGATGAAGAGGGAAGCCATGGACCGTTCACTGTATTTTGTGATATGACTGACAAGAATGGAGTTGGCGTGACAATCATCAGTCACGACAGTGAGGCGAGAACGCGCGTGAAAGGCTATGAGGCAAGTGGGAGTTATGTTCGCAACGTCCATTACACAGCAACAGGCCTAACTGGTGTTTCACAAATGGCTTTCCTCGCGGACGTGTCCACTCATTGCGAGCAGTTTATCAAGTACGAGTGTCGTGGTACCGCCATTTTTCGCTACAACACTGGCTGGTGGGTGTCAAGAACTGGAGCCAAAATGACCTACTGGGGAGGAGCCACACCAGCTGACCACAACAAATGCGCATGCGGCGTTACGTCACCCAACTCCTGCGCAAGCACGGCTTATGGGTGTAATTGCGATAAAAACGACGGCACGTTTCGTGAGGACAGCGGTCTCCTCAAAAGAAAGTCCCAGCTTCCAGTGATACAGTTGAGATTCGGAGACACCGGCCATAGTGGTGAGGAAGGTTTCCACACGCTTGGAAAGTTGAAGTGTTACGGCATGGAACTGGAATAGAAACTGTTATGAAGAAAGAGAAAAATTAAACATGATTTTTTAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01410	COLFI	Fibrillar collagen C-terminal domain	Family	Interproscan
PF00008	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000885	Domain	Fibrillar collagen, C-terminal	Interproscan
IPR051022	Family	Notch Signaling and Cell Fate Determination	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR002181	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR036056	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24049	CRUMBS FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005201	Molecular Function	extracellular matrix structural constituent	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan