Gene detail

Detailed information of agem_s0030.g44.t1 in Acropora gemmifera

Genomic Location: sc0000030_pilon:633098...638530
NR annotation: XP_015780494.1, PREDICTED: aristaless-related homeobox protein-like isoform X1 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

agem_s0030.g44.t1

GATTAATGTTAATAAATTCTAATTATATTTTCCTGCAATGAATGTTTTGCTAATAACTGTGTTCGCGGATAAATGCGTTGATTGGGTATGAAAAGCCAATTTTCAGCCCAAAGAAAACCGCCTAGCCATGATCTTTTTCCTAATAATAGCAATTTAATTTAGCCGGGTCGGCTGCTGTGAAGCTTGAAAACTTGCCCTACGGGTTCTAGATCATCCAAGCGAGCAACAGCAAACTTAACAGACTGTTTCGGTTTTTAATATACTTCGGTGAAACGCAGAGTTGTCACAAGCTGTTAGCAGACTTGTTCAAGCTACTGCAAATGGATCTTGAGGGTAATGGAAGCCTTCAGTCGAAGGAAAGAAACAGGATTGTCAAGCATAGCATAAATGGAATCTTAGGACTTAACGATGAAACAACTTCTATAAAGGATGAATGTGGCGAAAATATGACACAAAGCACGCATGCTTCCGCAAAAGAAAACAACGAATCGGTAGAAACCACAGTTGAAGAAATACAGGAGGATGAAAGTAAAGCCAAGGAAGACGAAACTAACTCCTCCTCTGAGGATGGTTCTAACAGTTCGTCCAAAAAGAAAAAGACTCGATATCGCACGACATTCAGCCAATACCAACTAGAAGAATTAGAAAGAGCATTTGATAAGGCACCGTATCCGGATGTCTTCGCTCGGGAAGAACTCGCCTCGAAGCTTAGTCTGACAGAAGCGAGAATACAGGTTTGGTTTCAGAACAGGAGAGCAAAATGGCGAAAGCGAGAAAAGCTGTGCTCGTTTGGCGCAGTTCCCCCAGGACATGGCATGATTTACCCTTGGATACATCAGGACTCTTTCCCCGCCAATTCATCTTACCCGATAACATTCCCCCCGGGATTAGGCCCAAGTACTACCCGTGACATGTGTTCTTCGTTTTTCTCGACAACACCACATCCTATCCCTTGTTATCGCTCCGCTGTTCCTCGTGTTATTCGATCCTCAGGAACCGATCCCAGGGAATGCGCTTGTTCCTGTGGTATGTTATCTCCCACGGGGTCTACGTGTGTGTTCCCTCCCCCGTATCGGTTTCAAGAGGTTTCTAGAGGGCCAGAAGTGGCAGCGGAACAAACAAGTGGAGTATCAAGAGAAACCAATAGAGTATCCAGTATCACTTCGCTTCGCCTTCGAGCGAAAGAACACCAAATGAACCTTGTGCAAATTTTGAGCAGAAAATGAATGTACAAACATTGCTAGACTGTTAATGTTATACAAGGCCATTGTAAAACTCCTCATTCAGGGCACAACAAGAGTAGTAGTTCCCAGTCCATCCAGTTGAGTTTTAGAACGCGGAAGTTTGGGTTTAAGACCCCTGATTGGGGTGTTGACGAAGGAGTAATCCTAATCCAGTAGTTGATGTATTTCAGTCCGCAGATATCGAGATAGTCGCGAGTATGGGAGGGAGGATACGCGTTAAACGCTTGAAATACCGTCGCCATTCTGTATCGAATGGTTACTTCAAGTTCTTGCAATATATGTTGTCCAAAATGTTACCGTCCCTTATTAAGACTTTCGCTGCAGAGCAAACTTGGAAAAACGTGCTGCTTCACAATATCTTGCAGAACCCCACTGTCCAGAAAATGGACAAAATACGTTAAAACGAAGTTTTTTTTAACTGAAAAATTGGAAGAATAAAGGTAAATGTGCCCCTAAAAAGTAGGAGAACAAATATAGGATATTTTCTAGGGCCCAGAACTTAACAGAATCCTATCGAAATTCTAAAAGCGTAAAAAATCAACCAATTTACCGGTAATTTTTTTTCCAAAAGATACAACATGAAACAATGACAACTTGGATAACAGAATTCTCAATGGAAAAACTGTGAGTAAAGCAAGTTGGAGCTAATCTGATGCGCGAATCTTGGCAGAGAcaatacttgttattacagttaggcctctttcgcttgaggctgcatgcagacgaggctaatggttcatacaatggaaagtgacctactggcctcgtttgcgtgtcaaaacctctgatagccgtaatcccagctactGAACAGTTCGAGTACTGTTATGGTAACACTAAGCACTGGCCGAAGCAAAATAAGGTTTTCaaaaaaaa

Protein

Uniprot

Gene family

Uniprot term	Description
O42115	Aristaless-related homeobox protein OS=Danio rerio OX=7955 GN=arx PE=2 SV=1
Q26657	Aristaless homeobox protein (Fragment) OS=Strongylocentrotus purpuratus OX=7668 GN=ALX PE=2 SV=2
P58304	Visual system homeobox 2 OS=Homo sapiens OX=9606 GN=VSX2 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03826	OAR	OAR motif	Motif	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR003654	Domain	OAR domain	Interproscan
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09452	ARX; homeobox protein aristaless-related	-	Transcription factors	ko03000	deepkoala