Gene detail

Detailed information of agem_s0032.g40.t2 in Acropora gemmifera

Genomic Location: sc0000032_pilon:333076...353005
NR annotation: XP_029207373.1, kinesin light chain-like isoform X1 [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

agem_s0032.g40.t2

ATGACAAATCTTGAAGGAAACAAAAAATGGAGTCAAGATGAAATTATAAACAACACCAGAAATGTTGTACGAGGGTTAGAAACCTTGAAAAATGAACACTCGGGGCTCTTAAACAATCTAACTTCCAACCCCGCAAAAAATGGAGGAGAAGCGGAATTGGAAATGGAGAAGGGTTCTATTATTCAAGAATCTATTGAAAAAATCGAGCTGGGATTAGGTGAAGCTCAGGTCATGATGGCATTGTGCAGCCATCTTAGCACAGTTGAGGCAGAAAAACAGAAATTGAAAGCTCAAGTGAAAAGGCTTTGTCAAGAGAATGCATGGCTCAGAGAAGAACTGTCTGTCACACAACAGAAGCTTCAAGAAAGTGAACAGAAAGTTGCTCAGCTTGAAGAGGAGAAAAAACACCTTGAATTTATGAACTCGATCAAAAAATATGATGATGATAAGCATGATGAGGGTATTGAAAATGACATCAGTCTTGACGTGCTGTCACAAGATGAGGATGATACAGAGGTTGATGATGAAACTTTGAGTCAGGCATCGTCAGCAACCTCGGCCAGTGCATCAGGTGTTTATGAAATCCCGGCAAGACTGAGGACTTTGCACAATTTGGTCATCCAATATGCTTCACAGGGTCGCTATGAAGTGGCAGTTCCACTGTGCAAACAAGCTTTAGAAGATCTGGAAAAGACGTCAGGCCATGATCATCCAGACGTGGCAACTATGCTTAACATCCTTGCTCTTGTATACAGATACAATATAGTGCACCCAGCCGTAGATCTCCCTAAATGTGTCCTGTGGGACATAATTAATTTCCTCATGCATCCGGTGAGACACTGCATAGAAGATGATCGCAGCCTGGACAGGGTTAGTATAACAGCCTCCAGACACATGCTGAGGCCTAGCCTGGAGGCATCAGCGAAGGACAGTGTCATGACGGACAGTGAACTGTCGCTTGTATCTGGTGTCATGTTCGAACAGCATGACAAGCTCACTGAGAGAATGGAGACAGTGGAGGCAACTGTTGGACAGGACCAAAACAAGTACAAAGAAGCTGCCAACCTGCTTCACGATGCGCTAACCATTCGCGAGAAGACGCTCGGCGAGGATCACCCAGCTGTAGCCGCAACTCTCAACAACTTAGCAGTCCTTTATGGTAAAAGAGGAAAATATAAGGAGGCTGAACCGCTTTGTAAACGAGCCTTGGAGATAAGAGAGAAGGTATTGGGTAAAGACCATCCCGACGTAGCTAAGCAGTTGAATAATTTAGCTTTGCTCTGTCAGAATCAAGGAAAGTACGATGAGGTGGAGCAGTATTATCAACGAGCTTTGGAAATTTACACCACCAAACTCGGACCTGACGATCCTAACGTGGCCAAGACAAAAAATAACTTGGCCTCGGCGTATTTGAAACAAGGTAAATACAAGGCTGCGGAAACTCTTTACAAACAGGTTCTCACGAGAGCTCACGAACGCGAGTTTGGACCTGGTACCGAGTCATCCCTGGAGGATGATGGAAAGCGCGGGAAAGATAACGCGCCTTACGGAGAATACGGCGGCTGGCACAAGGCGGCAAAAGTCGACAGTCCGACTGTCACCACCACCCTTAGGAATCTGGGCGCCTTGTACCGCAGACAGGGCAAGTTTGAAGCAGCGGAGACATTAGAAGAGTGTGCGCTGAGGTCTCGACAGAACGCCATTGACGTTGTTCGTCAAACCAAAGTAGCTCAACTTCTCGCTGAAGATGTTGGTGGGAACTCCTCTTTTTCCGCGGGCGGTAGCGTGGCATCTTCCGCGTCATCTCTCAATGGCAGCAGCAGTAAAACATCCATTGAATCCGAAAGAGACGATACCAACGACGACAAGAAGAACGGAAAGCGAGAGAAAACGTTTTCACGCCTCAAGCGAACCCTTAGCAGCCGCGGCCAGAAACTGATGGAGAAGATGGGAGCCAGTGGCACCCGACTCCAGCGGTCGTCATCACGTGACAACCTAGCCCACCATGCCAAGCTGTCAGCGTCGGAGCGAATTTCTCGAAGCACACCTATGCTGGCTCAGCCGCAATCTGATCCTGACAGGGGAAGGTCGGGAAGTATCAGCATCAGAGGGGCTCATCTAGGGTCATAA

Transcript

agem_s0032.g40.t2

GTACGTAAATTTGAGACCTGAATCATACGAAAATTAAAACCGGGCATTTGCTGATTTTCGTCTTTAAAACGGAGCTGAATAAGTCGACAGGACGAAGATGGATTTTGATACCTAGTCTACGACTGAAAAAAAAAAAGATTGCATTGTCATTGGATGACAAAGTTGTTCGAAGTGACGACGTTTGAGGACTATAAGACGCCATCTTGCAAAGGGCTCTATCATCGATAAGCATTTTGTTGCAGCATGACAAATCTTGAAGGAAACAAAAAATGGAGTCAAGATGAAATTATAAACAACACCAGAAATGTTGTACGAGGGTTAGAAACCTTGAAAAATGAACACTCGGGGCTCTTAAACAATCTAACTTCCAACCCCGCAAAAAATGGAGGAGAAGCGGAATTGGAAATGGAGAAGGGTTCTATTATTCAAGAATCTATTGAAAAAATCGAGCTGGGATTAGGTGAAGCTCAGGTCATGATGGCATTGTGCAGCCATCTTAGCACAGTTGAGGCAGAAAAACAGAAATTGAAAGCTCAAGTGAAAAGGCTTTGTCAAGAGAATGCATGGCTCAGAGAAGAACTGTCTGTCACACAACAGAAGCTTCAAGAAAGTGAACAGAAAGTTGCTCAGCTTGAAGAGGAGAAAAAACACCTTGAATTTATGAACTCGATCAAAAAATATGATGATGATAAGCATGATGAGGGTATTGAAAATGACATCAGTCTTGACGTGCTGTCACAAGATGAGGATGATACAGAGGTTGATGATGAAACTTTGAGTCAGGCATCGTCAGCAACCTCGGCCAGTGCATCAGGTGTTTATGAAATCCCGGCAAGACTGAGGACTTTGCACAATTTGGTCATCCAATATGCTTCACAGGGTCGCTATGAAGTGGCAGTTCCACTGTGCAAACAAGCTTTAGAAGATCTGGAAAAGACGTCAGGCCATGATCATCCAGACGTGGCAACTATGCTTAACATCCTTGCTCTTGTATACAGATACAATATAGTGCACCCAGCCGTAGATCTCCCTAAATGTGTCCTGTGGGACATAATTAATTTCCTCATGCATCCGGTGAGACACTGCATAGAAGATGATCGCAGCCTGGACAGGGTTAGTATAACAGCCTCCAGACACATGCTGAGGCCTAGCCTGGAGGCATCAGCGAAGGACAGTGTCATGACGGACAGTGAACTGTCGCTTGTATCTGGTGTCATGTTCGAACAGCATGACAAGCTCACTGAGAGAATGGAGACAGTGGAGGCAACTGTTGGACAGGACCAAAACAAGTACAAAGAAGCTGCCAACCTGCTTCACGATGCGCTAACCATTCGCGAGAAGACGCTCGGCGAGGATCACCCAGCTGTAGCCGCAACTCTCAACAACTTAGCAGTCCTTTATGGTAAAAGAGGAAAATATAAGGAGGCTGAACCGCTTTGTAAACGAGCCTTGGAGATAAGAGAGAAGGTATTGGGTAAAGACCATCCCGACGTAGCTAAGCAGTTGAATAATTTAGCTTTGCTCTGTCAGAATCAAGGAAAGTACGATGAGGTGGAGCAGTATTATCAACGAGCTTTGGAAATTTACACCACCAAACTCGGACCTGACGATCCTAACGTGGCCAAGACAAAAAATAACTTGGCCTCGGCGTATTTGAAACAAGGTAAATACAAGGCTGCGGAAACTCTTTACAAACAGGTTCTCACGAGAGCTCACGAACGCGAGTTTGGACCTGGTACCGAGTCATCCCTGGAGGATGATGGAAAGCGCGGGAAAGATAACGCGCCTTACGGAGAATACGGCGGCTGGCACAAGGCGGCAAAAGTCGACAGTCCGACTGTCACCACCACCCTTAGGAATCTGGGCGCCTTGTACCGCAGACAGGGCAAGTTTGAAGCAGCGGAGACATTAGAAGAGTGTGCGCTGAGGTCTCGACAGAACGCCATTGACGTTGTTCGTCAAACCAAAGTAGCTCAACTTCTCGCTGAAGATGTTGGTGGGAACTCCTCTTTTTCCGCGGGCGGTAGCGTGGCATCTTCCGCGTCATCTCTCAATGGCAGCAGCAGTAAAACATCCATTGAATCCGAAAGAGACGATACCAACGACGACAAGAAGAACGGAAAGCGAGAGAAAACGTTTTCACGCCTCAAGCGAACCCTTAGCAGCCGCGGCCAGAAACTGATGGAGAAGATGGGAGCCAGTGGCACCCGACTCCAGCGGTCGTCATCACGTGACAACCTAGCCCACCATGCCAAGCTGTCAGCGTCGGAGCGAATTTCTCGAAGCACACCTATGCTGGCTCAGCCGCAATCTGATCCTGACAGGGGAAGGTCGGGAAGTATCAGCATCAGAGGGGCTCATCTAGGGTCATAACGGGTAGCGGTAGTCGGATGCTTTTTATCAAAAATACTACTGTTTCGTAAAATTGTTTCAGTTCGTTTGCGTTGTTGTTTTTTTTTCCCTTTTTAAAAACTGCCTTTTTAATTATTTTTGGTTGCAAATGGCACTATGTTCATTACGTTTTCAGGCTGACCGAATTAAAAACCTGTCATGTAAGGGTAGGGTGGTTGGGGAATGTATCCAGCCGTTGCGATTAAAAGAAAAACAAGAACTCGTCTAGGTGCGTCTAAGGATCCATTACTTTTTACCGTTGCTTTAAATGGGCAATTTAAGTTCCACTGACGTGATTTAGAAAACTGCGAGAGGTGGGATTATCTTTCTTTAGGTATAGAGATAGATTTGCGTATTTTTGAACTTATCGAAGAGGATTTCTTCTAATTTGATTTTACATTGATTTTACCTTATTTATTACACATCCGTTTTTCCGTAAGTTGCAATTAATGTGTTGTCAATTGTGGAAAAAGTCTGCTGGTTGATTAGTAAATATCAAAGTACAGTCGGAATTGAAATTTAGGAAAGATGTAAATACGGACGAATGTCAAGTTAAAGAGAAAATGCAATAAATTATCGGCTCGAAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P46825	Kinesin light chain OS=Doryteuthis pealeii OX=1051067 PE=2 SV=1
Q05090	Kinesin light chain OS=Strongylocentrotus purpuratus OX=7668 PE=2 SV=1
P37285	Kinesin light chain 1 OS=Rattus norvegicus OX=10116 GN=Klc1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002796 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002151 all species →	Family	Kinesin light chain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45783 all species →	KINESIN LIGHT CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0019894 all species →	Molecular Function	kinesin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10407	KLC; kinesin light chain	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.