Gene detail

Detailed information of agem_s0032.g49.t2 in Acropora gemmifera

Genomic Location: sc0000032_pilon:431379...435339
NR annotation: XP_029179975.2, WD repeat-containing protein 25-like [Acropora millepora]
Species Acropora gemmifera · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

agem_s0032.g49.t2

GTAAGGCGCATGCGTCAGAGTGATTTCCAACGCACCAATCAGACAAAAGTCTCCTTTGTTATTTGAAGAACATTCTTCATAATTCATTCCCAGTCTTCGACGAGTGACCTGAAAACATGGCGGCAAGTTAGTAGTTGTGTTGTTATCATTGTCGTTCACCTTCCGAGTCAGTGGAAATTAAGATGGAGTCCTTGCTTGTTTATTCCAGTGATTCAGACTCCGATGAACCTGTACAGAACCAACGACTAGAAGAAAGTGAAAAGAAACGTAAAGTTACGAAAATGGAGCAAGGGAGCGACGTTTCTGGAGAGAAAGACGAATTGCAGCTTGTTGTTAAAAGGACAAAGTCTTGTCTTAAATCATCAGATGAACGTTATGTGAGAAATAACATTCCTGATTCAAAGCAAAATTCATGCGTAATTCATCAAGCGTCGAAACATCAGCCCAATAACATGTCAAGAAATTTTGATGTGTCGCATTCACTTGCTCCTCCTGGAAGTAATGTGAAGAACAGTGTACCAGCTGTAACATCAACGATGCGTGGTAGCGTTTCGGCGAATAGTAGTAAAATCAAGCCTTATATTTCAAAAAGGGAGAGAGAAAAATCGATCGAACCAATTACATCAGGTGTATCATCAGCGAACGCCTCGGTTTCTTCAACAGAACCGCGGCAGAGGGTGGCTGATTTTGACTTCATGTCAAGACAAGATGAGGAAAGAACAAGCAATGAGGCGATGTCCAACAAAAAGCCAAACTATTTTAACAGACCACCAAAACAAGTGGTTGTAACGTTTGAGGGTCATTCCCAGGGAGTTAACTGCGTACGATGGCATCCTACTAGAAGCAACTTGTTGGTCTCGGCATCAATGGATCAGAGTGTTCGTGTCTGGGATGCTTCATCTGGTGCCACTTATAGCAAATTGACACACCACACTGCAGCTGTAAAAGATGCAAAATGGAATCTTGATGGGTCTCAAGTTTTGAGCTGTGGTTATGACAAGACGGCCAGGCTTGTGAATTTAGAAACAGGACAAGAAGTTGTCAGGTTTCCTCATCACAACTATGTGACTTCTGTCCAGTTTCATCCTACCGATTCAAAACTTTTCCTTGCTGGGACTTTCAAATCTTCCATCCTGTGCTGGGATATCAGGACTGGAAATAAGTAATCAAAAGAAACTCTACTGACAAAGGAATCATGGTCTGGGACTTCCGGTCAACAGCAGTGCTGTCCAATCAAATTTATCAGGAGGCATTTACCTGTACCAGCTTAAAAGTTCACCCCTGTGAGTCACATTTTGTAGCTCAGTCTAATGGCAATTACATAGCTCTGTTCTCGACAAGAAAGCCCTACAAGCTGAACAAGTTTAAAAGATATGAAGGACACAAGGTGTCTGGATATCATATTGGTTGTGACTTCAGTCCTGATGGTTCAATAATTTGCTCTGGTTCAGCAGATGGACAAATCTATTTTTACGATCATCATAGCTCTCGCATGATAAGTGAACTTAGTGGTCACTCAATGCCTTGTATGGATGTTGCTTTTCACCCCACCCTCCCCCACTGTATAGCAAGCTGTGGGTGGGATGGTGGAGTAAAAATCTGGAAATAATCAAGGTTTTTCAATTGTTAAAGTTTAAATGAAGGAAAAGCCACCTTTTTATTTTCATCATTCTTGGAGGTCTCAACCATGGTTTTTCCGCAGGTTGTcttcaatatcatttgatttcaaggtcttgatggaattgcgggttggtggatgggctttcagttggcttcgattttaatgtcttaaattggtagccatggaaatcactgcttgttctacatgcatggtccactgaaatattcctagtgaagagctttcaacaagttgagtgaatttgtgtccatttgttaaaagtattattgatgctagttataaaaacatctgaaagctgtgtatacatagttttgtattttctagagaatggatgctgcaatttgatcacaatatttaatgcaccttactgattttttattacatctagtGTTGATGCTATAAAATAAAAGGCATTTGAAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C5FWH1	Nuclear distribution protein PAC1 OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) OX=554155 GN=PAC1 PE=3 SV=1
C4JPW9	Nuclear distribution protein PAC1-2 OS=Uncinocarpus reesii (strain UAMH 1704) OX=336963 GN=PAC1-2 PE=3 SV=1
A2QP30	Nuclear distribution protein nudF OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=nudF PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003383 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR053053 all species →	Family	WD repeat-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44566 all species →	TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for agem_s0032.g49.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.